Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19225 and BPHYT_RS19230 are separated by 676 nucleotides BPHYT_RS19230 and BPHYT_RS19235 are separated by 210 nucleotides BPHYT_RS19235 and BPHYT_RS19240 are separated by 316 nucleotides
BPHYT_RS19225: BPHYT_RS19225 - hypothetical protein, at 4,317,671 to 4,318,537
_RS19225
BPHYT_RS19230: BPHYT_RS19230 - hypothetical protein, at 4,319,214 to 4,319,624
_RS19230
BPHYT_RS19235: BPHYT_RS19235 - hypothetical protein, at 4,319,835 to 4,320,125
_RS19235
BPHYT_RS19240: BPHYT_RS19240 - hydrolase, at 4,320,442 to 4,320,945
_RS19240
Position (kb) 4319
4320 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4318.333 kb on + strand, within BPHYT_RS19225 at 4318.334 kb on - strand, within BPHYT_RS19225 at 4318.334 kb on - strand, within BPHYT_RS19225 at 4318.455 kb on - strand at 4318.455 kb on - strand at 4318.455 kb on - strand at 4318.455 kb on - strand at 4318.490 kb on - strand at 4318.536 kb on - strand at 4318.577 kb on + strand at 4318.577 kb on + strand at 4318.591 kb on + strand at 4318.591 kb on + strand at 4318.686 kb on + strand at 4318.689 kb on + strand at 4318.758 kb on - strand at 4318.904 kb on + strand at 4318.904 kb on + strand at 4318.904 kb on + strand at 4318.905 kb on - strand at 4318.979 kb on + strand at 4318.979 kb on + strand at 4318.980 kb on - strand at 4319.060 kb on + strand at 4319.076 kb on + strand at 4319.083 kb on + strand at 4319.083 kb on + strand at 4319.139 kb on - strand at 4319.142 kb on + strand at 4319.143 kb on - strand at 4319.143 kb on - strand at 4319.143 kb on - strand at 4319.268 kb on + strand, within BPHYT_RS19230 at 4319.284 kb on + strand, within BPHYT_RS19230 at 4319.285 kb on - strand, within BPHYT_RS19230 at 4319.285 kb on - strand, within BPHYT_RS19230 at 4319.285 kb on - strand, within BPHYT_RS19230 at 4319.289 kb on + strand, within BPHYT_RS19230 at 4319.289 kb on + strand, within BPHYT_RS19230 at 4319.290 kb on - strand, within BPHYT_RS19230 at 4319.290 kb on - strand, within BPHYT_RS19230 at 4319.331 kb on - strand, within BPHYT_RS19230 at 4319.363 kb on + strand, within BPHYT_RS19230 at 4319.366 kb on - strand, within BPHYT_RS19230 at 4319.509 kb on - strand, within BPHYT_RS19230 at 4319.656 kb on + strand at 4319.656 kb on + strand at 4319.657 kb on - strand at 4319.713 kb on + strand at 4319.717 kb on + strand at 4319.717 kb on + strand at 4319.718 kb on - strand at 4319.747 kb on - strand at 4319.747 kb on - strand at 4319.757 kb on - strand at 4319.769 kb on - strand at 4319.842 kb on - strand at 4319.842 kb on - strand at 4320.025 kb on + strand, within BPHYT_RS19235 at 4320.026 kb on - strand, within BPHYT_RS19235 at 4320.049 kb on + strand, within BPHYT_RS19235 at 4320.050 kb on - strand, within BPHYT_RS19235 at 4320.053 kb on - strand, within BPHYT_RS19235 at 4320.097 kb on - strand at 4320.434 kb on + strand at 4320.434 kb on + strand at 4320.532 kb on + strand, within BPHYT_RS19240 at 4320.596 kb on - strand, within BPHYT_RS19240 at 4320.596 kb on - strand, within BPHYT_RS19240 at 4320.614 kb on + strand, within BPHYT_RS19240 at 4320.614 kb on + strand, within BPHYT_RS19240 at 4320.614 kb on + strand, within BPHYT_RS19240 at 4320.615 kb on - strand, within BPHYT_RS19240 at 4320.615 kb on - strand, within BPHYT_RS19240 at 4320.615 kb on - strand, within BPHYT_RS19240
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 4,318,333 + BPHYT_RS19225 0.76 -0.6 4,318,334 - BPHYT_RS19225 0.76 -0.2 4,318,334 - BPHYT_RS19225 0.76 -0.4 4,318,455 - -1.0 4,318,455 - -0.6 4,318,455 - -0.7 4,318,455 - +0.5 4,318,490 - -0.0 4,318,536 - -0.8 4,318,577 + +1.0 4,318,577 + -1.2 4,318,591 + +0.6 4,318,591 + -0.9 4,318,686 + +0.2 4,318,689 + -0.4 4,318,758 - +0.1 4,318,904 + +0.8 4,318,904 + -0.5 4,318,904 + +0.0 4,318,905 - -1.3 4,318,979 + +0.3 4,318,979 + +1.0 4,318,980 - -0.3 4,319,060 + +0.9 4,319,076 + -0.7 4,319,083 + -0.9 4,319,083 + -0.0 4,319,139 - +0.6 4,319,142 + +0.0 4,319,143 - +0.8 4,319,143 - +0.6 4,319,143 - -1.3 4,319,268 + BPHYT_RS19230 0.13 +1.0 4,319,284 + BPHYT_RS19230 0.17 -0.6 4,319,285 - BPHYT_RS19230 0.17 -0.6 4,319,285 - BPHYT_RS19230 0.17 -2.2 4,319,285 - BPHYT_RS19230 0.17 -0.9 4,319,289 + BPHYT_RS19230 0.18 +0.2 4,319,289 + BPHYT_RS19230 0.18 -0.3 4,319,290 - BPHYT_RS19230 0.18 -0.1 4,319,290 - BPHYT_RS19230 0.18 -0.2 4,319,331 - BPHYT_RS19230 0.28 -0.4 4,319,363 + BPHYT_RS19230 0.36 -2.2 4,319,366 - BPHYT_RS19230 0.37 -0.8 4,319,509 - BPHYT_RS19230 0.72 -0.6 4,319,656 + -1.3 4,319,656 + +3.3 4,319,657 - -0.9 4,319,713 + -0.9 4,319,717 + -1.9 4,319,717 + +0.6 4,319,718 - +0.8 4,319,747 - -0.7 4,319,747 - -0.6 4,319,757 - -0.6 4,319,769 - +1.3 4,319,842 - -0.8 4,319,842 - -0.6 4,320,025 + BPHYT_RS19235 0.65 +0.2 4,320,026 - BPHYT_RS19235 0.66 -0.9 4,320,049 + BPHYT_RS19235 0.74 -1.0 4,320,050 - BPHYT_RS19235 0.74 +0.6 4,320,053 - BPHYT_RS19235 0.75 -0.8 4,320,097 - -0.8 4,320,434 + -0.4 4,320,434 + -1.2 4,320,532 + BPHYT_RS19240 0.18 -1.6 4,320,596 - BPHYT_RS19240 0.31 +1.6 4,320,596 - BPHYT_RS19240 0.31 -0.1 4,320,614 + BPHYT_RS19240 0.34 -1.9 4,320,614 + BPHYT_RS19240 0.34 -2.0 4,320,614 + BPHYT_RS19240 0.34 -1.3 4,320,615 - BPHYT_RS19240 0.34 -0.6 4,320,615 - BPHYT_RS19240 0.34 -0.5 4,320,615 - BPHYT_RS19240 0.34 -0.3
Or see this region's nucleotide sequence