Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06365

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS06360 and BPHYT_RS06365 are separated by 61 nucleotidesBPHYT_RS06365 and BPHYT_RS06370 are separated by 95 nucleotides BPHYT_RS06360: BPHYT_RS06360 - chemotaxis protein CheY, at 1,448,623 to 1,449,633 _RS06360 BPHYT_RS06365: BPHYT_RS06365 - deaminase reductase, at 1,449,695 to 1,450,357 _RS06365 BPHYT_RS06370: BPHYT_RS06370 - carboxylesterase, at 1,450,453 to 1,451,454 _RS06370 Position (kb) 1449 1450 1451Strain fitness (log2 ratio) -2 -1 0 1at 1448.698 kb on + strandat 1448.698 kb on + strandat 1448.698 kb on + strandat 1448.945 kb on + strand, within BPHYT_RS06360at 1448.946 kb on - strand, within BPHYT_RS06360at 1448.946 kb on - strand, within BPHYT_RS06360at 1448.946 kb on - strand, within BPHYT_RS06360at 1448.946 kb on - strand, within BPHYT_RS06360at 1448.953 kb on + strand, within BPHYT_RS06360at 1448.953 kb on + strand, within BPHYT_RS06360at 1448.954 kb on - strand, within BPHYT_RS06360at 1448.954 kb on - strand, within BPHYT_RS06360at 1448.955 kb on + strand, within BPHYT_RS06360at 1449.128 kb on + strand, within BPHYT_RS06360at 1449.129 kb on - strand, within BPHYT_RS06360at 1449.129 kb on - strand, within BPHYT_RS06360at 1449.160 kb on + strand, within BPHYT_RS06360at 1449.160 kb on + strand, within BPHYT_RS06360at 1449.161 kb on - strand, within BPHYT_RS06360at 1449.186 kb on + strand, within BPHYT_RS06360at 1449.223 kb on + strand, within BPHYT_RS06360at 1449.600 kb on + strandat 1449.631 kb on + strandat 1449.876 kb on + strand, within BPHYT_RS06365at 1449.876 kb on + strand, within BPHYT_RS06365at 1450.050 kb on + strand, within BPHYT_RS06365at 1450.253 kb on + strand, within BPHYT_RS06365at 1450.253 kb on + strand, within BPHYT_RS06365at 1450.253 kb on + strand, within BPHYT_RS06365at 1450.253 kb on + strand, within BPHYT_RS06365at 1450.254 kb on - strand, within BPHYT_RS06365at 1450.403 kb on + strandat 1450.454 kb on + strandat 1450.517 kb on + strandat 1450.517 kb on + strandat 1450.530 kb on + strandat 1450.532 kb on + strandat 1450.532 kb on + strandat 1450.532 kb on + strandat 1450.532 kb on + strandat 1450.533 kb on - strandat 1450.635 kb on + strand, within BPHYT_RS06370at 1450.646 kb on + strand, within BPHYT_RS06370at 1450.742 kb on + strand, within BPHYT_RS06370at 1450.784 kb on + strand, within BPHYT_RS06370at 1450.787 kb on + strand, within BPHYT_RS06370at 1450.787 kb on + strand, within BPHYT_RS06370at 1450.787 kb on + strand, within BPHYT_RS06370at 1450.787 kb on + strand, within BPHYT_RS06370at 1450.787 kb on + strand, within BPHYT_RS06370at 1450.788 kb on - strand, within BPHYT_RS06370at 1450.788 kb on - strand, within BPHYT_RS06370at 1450.899 kb on + strand, within BPHYT_RS06370at 1451.058 kb on + strand, within BPHYT_RS06370at 1451.078 kb on + strand, within BPHYT_RS06370at 1451.079 kb on - strand, within BPHYT_RS06370at 1451.129 kb on + strand, within BPHYT_RS06370at 1451.203 kb on + strand, within BPHYT_RS06370

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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1,448,698 + -2.1
1,448,698 + -0.1
1,448,698 + -0.4
1,448,945 + BPHYT_RS06360 0.32 -0.1
1,448,946 - BPHYT_RS06360 0.32 +1.2
1,448,946 - BPHYT_RS06360 0.32 +0.6
1,448,946 - BPHYT_RS06360 0.32 -0.7
1,448,946 - BPHYT_RS06360 0.32 -0.6
1,448,953 + BPHYT_RS06360 0.33 +0.6
1,448,953 + BPHYT_RS06360 0.33 -0.0
1,448,954 - BPHYT_RS06360 0.33 -1.2
1,448,954 - BPHYT_RS06360 0.33 +0.3
1,448,955 + BPHYT_RS06360 0.33 -0.7
1,449,128 + BPHYT_RS06360 0.50 +0.2
1,449,129 - BPHYT_RS06360 0.50 -0.2
1,449,129 - BPHYT_RS06360 0.50 +0.8
1,449,160 + BPHYT_RS06360 0.53 -1.2
1,449,160 + BPHYT_RS06360 0.53 +0.5
1,449,161 - BPHYT_RS06360 0.53 -0.8
1,449,186 + BPHYT_RS06360 0.56 +0.9
1,449,223 + BPHYT_RS06360 0.59 +0.1
1,449,600 + -0.0
1,449,631 + +0.3
1,449,876 + BPHYT_RS06365 0.27 +0.8
1,449,876 + BPHYT_RS06365 0.27 -1.1
1,450,050 + BPHYT_RS06365 0.54 +0.3
1,450,253 + BPHYT_RS06365 0.84 +0.2
1,450,253 + BPHYT_RS06365 0.84 +1.2
1,450,253 + BPHYT_RS06365 0.84 +0.4
1,450,253 + BPHYT_RS06365 0.84 +0.8
1,450,254 - BPHYT_RS06365 0.84 -0.5
1,450,403 + -0.5
1,450,454 + -0.7
1,450,517 + -0.8
1,450,517 + +1.0
1,450,530 + -1.9
1,450,532 + -0.4
1,450,532 + -0.1
1,450,532 + -0.1
1,450,532 + -0.2
1,450,533 - -0.2
1,450,635 + BPHYT_RS06370 0.18 -0.2
1,450,646 + BPHYT_RS06370 0.19 -0.4
1,450,742 + BPHYT_RS06370 0.29 +0.6
1,450,784 + BPHYT_RS06370 0.33 -0.2
1,450,787 + BPHYT_RS06370 0.33 +0.2
1,450,787 + BPHYT_RS06370 0.33 +1.5
1,450,787 + BPHYT_RS06370 0.33 +0.7
1,450,787 + BPHYT_RS06370 0.33 +1.3
1,450,787 + BPHYT_RS06370 0.33 -0.7
1,450,788 - BPHYT_RS06370 0.33 -1.0
1,450,788 - BPHYT_RS06370 0.33 -2.1
1,450,899 + BPHYT_RS06370 0.45 +0.2
1,451,058 + BPHYT_RS06370 0.60 +0.2
1,451,078 + BPHYT_RS06370 0.62 -0.4
1,451,079 - BPHYT_RS06370 0.62 -0.0
1,451,129 + BPHYT_RS06370 0.67 -0.1
1,451,203 + BPHYT_RS06370 0.75 -1.1

Or see this region's nucleotide sequence