Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04010 and BPHYT_RS04015 are separated by 55 nucleotides BPHYT_RS04015 and BPHYT_RS04020 are separated by 31 nucleotides BPHYT_RS04020 and BPHYT_RS04025 are separated by 185 nucleotides
BPHYT_RS04010: BPHYT_RS04010 - glycosyl transferase, at 913,484 to 914,626
_RS04010
BPHYT_RS04015: BPHYT_RS04015 - glycosyl transferase, at 914,682 to 916,034
_RS04015
BPHYT_RS04020: BPHYT_RS04020 - hypothetical protein, at 916,066 to 916,572
_RS04020
BPHYT_RS04025: BPHYT_RS04025 - hypothetical protein, at 916,758 to 917,378
_RS04025
Position (kb) 914
915
916
917 Strain fitness (log2 ratio) -1
0
1 at 914.307 kb on - strand, within BPHYT_RS04010 at 914.740 kb on - strand at 914.740 kb on - strand at 915.092 kb on + strand, within BPHYT_RS04015 at 915.702 kb on + strand, within BPHYT_RS04015 at 916.104 kb on - strand at 916.116 kb on - strand at 916.697 kb on + strand at 916.698 kb on - strand at 916.723 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 914,307 - BPHYT_RS04010 0.72 -1.2 914,740 - -0.3 914,740 - -0.5 915,092 + BPHYT_RS04015 0.30 -0.4 915,702 + BPHYT_RS04015 0.75 -1.2 916,104 - +0.3 916,116 - +0.5 916,697 + +1.0 916,698 - -0.5 916,723 + +0.2
Or see this region's nucleotide sequence