Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03065 and BPHYT_RS03070 are separated by 152 nucleotides BPHYT_RS03070 and BPHYT_RS03075 are separated by 104 nucleotides
BPHYT_RS03065: BPHYT_RS03065 - LuxR family transcriptional regulator, at 683,897 to 684,535
_RS03065
BPHYT_RS03070: BPHYT_RS03070 - LuxR family transcriptional regulator, at 684,688 to 685,392
_RS03070
BPHYT_RS03075: BPHYT_RS03075 - LuxR family transcriptional regulator, at 685,497 to 686,141
_RS03075
Position (kb) 684
685
686 Strain fitness (log2 ratio) -1
0
1 at 684.270 kb on - strand, within BPHYT_RS03065 at 684.503 kb on + strand at 684.613 kb on - strand at 684.708 kb on - strand at 684.880 kb on + strand, within BPHYT_RS03070 at 684.881 kb on - strand at 684.881 kb on - strand, within BPHYT_RS03070 at 684.881 kb on - strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.154 kb on - strand, within BPHYT_RS03070 at 685.201 kb on + strand, within BPHYT_RS03070 at 685.202 kb on - strand, within BPHYT_RS03070 at 685.391 kb on - strand at 685.803 kb on - strand, within BPHYT_RS03075 at 685.887 kb on + strand, within BPHYT_RS03075 at 685.887 kb on + strand, within BPHYT_RS03075 at 685.888 kb on - strand, within BPHYT_RS03075 at 685.990 kb on - strand, within BPHYT_RS03075 at 686.054 kb on + strand, within BPHYT_RS03075 at 686.152 kb on + strand at 686.166 kb on - strand at 686.166 kb on - strand at 686.250 kb on - strand at 686.336 kb on + strand at 686.336 kb on + strand at 686.357 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 684,270 - BPHYT_RS03065 0.58 -1.4 684,503 + -0.7 684,613 - -1.1 684,708 - -1.1 684,880 + BPHYT_RS03070 0.27 +0.5 684,881 - -0.9 684,881 - BPHYT_RS03070 0.27 -0.9 684,881 - BPHYT_RS03070 0.27 -0.6 685,093 + BPHYT_RS03070 0.57 +0.9 685,093 + BPHYT_RS03070 0.57 -0.2 685,093 + BPHYT_RS03070 0.57 +0.0 685,093 + BPHYT_RS03070 0.57 -1.1 685,093 + BPHYT_RS03070 0.57 +1.5 685,093 + BPHYT_RS03070 0.57 +0.3 685,093 + BPHYT_RS03070 0.57 +0.2 685,154 - BPHYT_RS03070 0.66 -0.5 685,201 + BPHYT_RS03070 0.73 +0.6 685,202 - BPHYT_RS03070 0.73 -0.7 685,391 - -0.0 685,803 - BPHYT_RS03075 0.47 -0.3 685,887 + BPHYT_RS03075 0.60 +0.1 685,887 + BPHYT_RS03075 0.60 -0.4 685,888 - BPHYT_RS03075 0.61 -1.2 685,990 - BPHYT_RS03075 0.76 -0.4 686,054 + BPHYT_RS03075 0.86 -0.5 686,152 + -0.8 686,166 - -0.3 686,166 - -0.4 686,250 - +0.1 686,336 + +0.4 686,336 + +0.5 686,357 - -0.3
Or see this region's nucleotide sequence