Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01950

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01940 and BPHYT_RS01945 are separated by 79 nucleotidesBPHYT_RS01945 and BPHYT_RS01950 are separated by 216 nucleotidesBPHYT_RS01950 and BPHYT_RS01955 are separated by 26 nucleotidesBPHYT_RS01955 and BPHYT_RS01960 overlap by 1 nucleotides BPHYT_RS01940: BPHYT_RS01940 - 16S rRNA methyltransferase, at 440,739 to 441,620 _RS01940 BPHYT_RS01945: BPHYT_RS01945 - hypothetical protein, at 441,700 to 442,122 _RS01945 BPHYT_RS01950: BPHYT_RS01950 - phosphoheptose isomerase, at 442,339 to 442,926 _RS01950 BPHYT_RS01955: BPHYT_RS01955 - hypothetical protein, at 442,953 to 443,750 _RS01955 BPHYT_RS01960: BPHYT_RS01960 - cytochrome C, at 443,750 to 444,097 _RS01960 Position (kb) 442 443Strain fitness (log2 ratio) -2 -1 0 1at 441.343 kb on + strand, within BPHYT_RS01940at 441.343 kb on + strand, within BPHYT_RS01940at 441.344 kb on - strand, within BPHYT_RS01940at 441.344 kb on - strand, within BPHYT_RS01940at 441.565 kb on + strandat 441.565 kb on + strandat 441.565 kb on + strandat 441.565 kb on + strandat 441.565 kb on + strandat 441.565 kb on + strandat 441.566 kb on - strandat 441.566 kb on - strandat 441.567 kb on + strandat 441.568 kb on - strandat 441.568 kb on - strandat 441.578 kb on + strandat 441.981 kb on + strand, within BPHYT_RS01945at 441.981 kb on + strand, within BPHYT_RS01945at 441.982 kb on - strand, within BPHYT_RS01945at 441.982 kb on - strand, within BPHYT_RS01945at 442.213 kb on + strandat 442.213 kb on + strandat 442.213 kb on + strandat 442.213 kb on + strandat 442.213 kb on + strandat 442.214 kb on - strandat 442.329 kb on + strandat 442.619 kb on - strand, within BPHYT_RS01950at 442.799 kb on + strand, within BPHYT_RS01950at 442.800 kb on - strand, within BPHYT_RS01950at 442.800 kb on - strand, within BPHYT_RS01950at 442.852 kb on - strand, within BPHYT_RS01950at 442.947 kb on + strandat 442.947 kb on + strandat 442.948 kb on - strandat 442.948 kb on - strandat 442.961 kb on - strandat 442.961 kb on - strandat 443.356 kb on - strand, within BPHYT_RS01955at 443.446 kb on - strand, within BPHYT_RS01955at 443.542 kb on - strand, within BPHYT_RS01955at 443.542 kb on - strand, within BPHYT_RS01955at 443.542 kb on - strand, within BPHYT_RS01955

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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441,343 + BPHYT_RS01940 0.68 -2.0
441,343 + BPHYT_RS01940 0.68 -0.5
441,344 - BPHYT_RS01940 0.69 -0.4
441,344 - BPHYT_RS01940 0.69 -0.7
441,565 + +0.2
441,565 + -0.5
441,565 + -0.4
441,565 + -0.9
441,565 + -0.9
441,565 + -1.4
441,566 - -1.7
441,566 - -0.4
441,567 + -0.5
441,568 - -0.8
441,568 - +0.1
441,578 + -1.3
441,981 + BPHYT_RS01945 0.66 -0.1
441,981 + BPHYT_RS01945 0.66 +0.5
441,982 - BPHYT_RS01945 0.67 +0.5
441,982 - BPHYT_RS01945 0.67 -0.1
442,213 + +0.1
442,213 + +1.0
442,213 + -0.9
442,213 + +0.3
442,213 + -0.5
442,214 - -1.5
442,329 + -1.3
442,619 - BPHYT_RS01950 0.48 -0.7
442,799 + BPHYT_RS01950 0.78 +0.2
442,800 - BPHYT_RS01950 0.78 -0.3
442,800 - BPHYT_RS01950 0.78 +1.6
442,852 - BPHYT_RS01950 0.87 -0.9
442,947 + -0.5
442,947 + +0.6
442,948 - -0.1
442,948 - -1.0
442,961 - -1.5
442,961 - -1.9
443,356 - BPHYT_RS01955 0.51 -2.3
443,446 - BPHYT_RS01955 0.62 -0.2
443,542 - BPHYT_RS01955 0.74 -0.7
443,542 - BPHYT_RS01955 0.74 -1.3
443,542 - BPHYT_RS01955 0.74 -1.7

Or see this region's nucleotide sequence