Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01915

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01910 and BPHYT_RS01915 are separated by 330 nucleotidesBPHYT_RS01915 and BPHYT_RS01920 are separated by 61 nucleotidesBPHYT_RS01920 and BPHYT_RS01925 are separated by 90 nucleotides BPHYT_RS01910: BPHYT_RS01910 - H-NS histone, at 435,598 to 435,900 _RS01910 BPHYT_RS01915: BPHYT_RS01915 - cation diffusion facilitator family transporter, at 436,231 to 437,487 _RS01915 BPHYT_RS01920: BPHYT_RS01920 - AsnC family transcriptional regulator, at 437,549 to 438,007 _RS01920 BPHYT_RS01925: BPHYT_RS01925 - exonuclease, at 438,098 to 438,727 _RS01925 Position (kb) 436 437 438Strain fitness (log2 ratio) -2 -1 0 1at 435.238 kb on + strandat 435.263 kb on + strandat 435.263 kb on + strandat 435.263 kb on + strandat 435.343 kb on + strandat 435.898 kb on + strandat 435.899 kb on - strandat 435.956 kb on + strandat 435.956 kb on + strandat 435.985 kb on + strandat 436.100 kb on - strandat 436.287 kb on + strandat 436.288 kb on - strandat 436.288 kb on - strandat 436.468 kb on + strand, within BPHYT_RS01915at 436.468 kb on + strand, within BPHYT_RS01915at 436.469 kb on - strand, within BPHYT_RS01915at 436.477 kb on - strand, within BPHYT_RS01915at 436.544 kb on + strand, within BPHYT_RS01915at 436.545 kb on - strand, within BPHYT_RS01915at 436.545 kb on - strand, within BPHYT_RS01915at 436.596 kb on + strand, within BPHYT_RS01915at 436.596 kb on + strand, within BPHYT_RS01915at 436.597 kb on - strand, within BPHYT_RS01915at 436.597 kb on - strand, within BPHYT_RS01915at 436.597 kb on - strand, within BPHYT_RS01915at 436.597 kb on - strand, within BPHYT_RS01915at 436.620 kb on - strand, within BPHYT_RS01915at 436.655 kb on - strand, within BPHYT_RS01915at 436.756 kb on - strand, within BPHYT_RS01915at 436.926 kb on + strand, within BPHYT_RS01915at 437.038 kb on + strand, within BPHYT_RS01915at 437.039 kb on - strand, within BPHYT_RS01915at 437.039 kb on - strand, within BPHYT_RS01915at 437.039 kb on - strand, within BPHYT_RS01915at 437.039 kb on - strand, within BPHYT_RS01915at 437.039 kb on - strand, within BPHYT_RS01915at 437.039 kb on - strand, within BPHYT_RS01915at 437.152 kb on - strand, within BPHYT_RS01915at 437.152 kb on - strand, within BPHYT_RS01915at 437.230 kb on + strand, within BPHYT_RS01915at 437.258 kb on + strand, within BPHYT_RS01915at 437.372 kb on + strandat 437.372 kb on + strandat 437.373 kb on - strandat 437.373 kb on - strandat 437.655 kb on + strand, within BPHYT_RS01920at 437.656 kb on - strand, within BPHYT_RS01920at 437.691 kb on + strand, within BPHYT_RS01920at 437.691 kb on + strand, within BPHYT_RS01920at 437.692 kb on - strand, within BPHYT_RS01920at 437.716 kb on - strandat 437.797 kb on + strand, within BPHYT_RS01920at 437.797 kb on + strand, within BPHYT_RS01920at 437.798 kb on - strand, within BPHYT_RS01920at 437.798 kb on - strand, within BPHYT_RS01920at 437.798 kb on - strand, within BPHYT_RS01920at 437.798 kb on - strand, within BPHYT_RS01920at 437.798 kb on - strand, within BPHYT_RS01920at 437.996 kb on - strandat 438.095 kb on + strandat 438.096 kb on - strandat 438.099 kb on + strandat 438.390 kb on + strand, within BPHYT_RS01925at 438.391 kb on - strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.475 kb on - strand, within BPHYT_RS01925at 438.475 kb on - strand, within BPHYT_RS01925at 438.475 kb on - strand, within BPHYT_RS01925

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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435,238 + +0.7
435,263 + -0.2
435,263 + -0.4
435,263 + +0.1
435,343 + -0.1
435,898 + -0.3
435,899 - -1.3
435,956 + +0.1
435,956 + -0.5
435,985 + -0.9
436,100 - +0.7
436,287 + +0.1
436,288 - -0.8
436,288 - -1.0
436,468 + BPHYT_RS01915 0.19 -0.5
436,468 + BPHYT_RS01915 0.19 -0.9
436,469 - BPHYT_RS01915 0.19 +0.2
436,477 - BPHYT_RS01915 0.20 -0.8
436,544 + BPHYT_RS01915 0.25 -0.5
436,545 - BPHYT_RS01915 0.25 +0.2
436,545 - BPHYT_RS01915 0.25 -0.1
436,596 + BPHYT_RS01915 0.29 +0.7
436,596 + BPHYT_RS01915 0.29 -0.5
436,597 - BPHYT_RS01915 0.29 -0.2
436,597 - BPHYT_RS01915 0.29 -0.7
436,597 - BPHYT_RS01915 0.29 -0.7
436,597 - BPHYT_RS01915 0.29 -0.2
436,620 - BPHYT_RS01915 0.31 -0.9
436,655 - BPHYT_RS01915 0.34 -0.7
436,756 - BPHYT_RS01915 0.42 -0.7
436,926 + BPHYT_RS01915 0.55 +0.1
437,038 + BPHYT_RS01915 0.64 +0.3
437,039 - BPHYT_RS01915 0.64 -0.2
437,039 - BPHYT_RS01915 0.64 -0.3
437,039 - BPHYT_RS01915 0.64 -0.1
437,039 - BPHYT_RS01915 0.64 -0.7
437,039 - BPHYT_RS01915 0.64 -0.2
437,039 - BPHYT_RS01915 0.64 -0.6
437,152 - BPHYT_RS01915 0.73 -0.6
437,152 - BPHYT_RS01915 0.73 -0.4
437,230 + BPHYT_RS01915 0.79 +0.8
437,258 + BPHYT_RS01915 0.82 +0.1
437,372 + -0.5
437,372 + -0.3
437,373 - -0.1
437,373 - -0.9
437,655 + BPHYT_RS01920 0.23 -1.5
437,656 - BPHYT_RS01920 0.23 -0.7
437,691 + BPHYT_RS01920 0.31 -0.8
437,691 + BPHYT_RS01920 0.31 -0.6
437,692 - BPHYT_RS01920 0.31 -1.9
437,716 - -1.1
437,797 + BPHYT_RS01920 0.54 -2.0
437,797 + BPHYT_RS01920 0.54 -1.3
437,798 - BPHYT_RS01920 0.54 -1.2
437,798 - BPHYT_RS01920 0.54 -2.2
437,798 - BPHYT_RS01920 0.54 -1.0
437,798 - BPHYT_RS01920 0.54 -1.5
437,798 - BPHYT_RS01920 0.54 -1.2
437,996 - -0.5
438,095 + -0.3
438,096 - +0.8
438,099 + -0.2
438,390 + BPHYT_RS01925 0.46 -0.3
438,391 - BPHYT_RS01925 0.47 +0.8
438,400 + BPHYT_RS01925 0.48 -0.0
438,400 + BPHYT_RS01925 0.48 +0.2
438,400 + BPHYT_RS01925 0.48 -0.5
438,400 + BPHYT_RS01925 0.48 -0.4
438,400 + BPHYT_RS01925 0.48 +0.6
438,400 + BPHYT_RS01925 0.48 +0.1
438,400 + BPHYT_RS01925 0.48 -0.6
438,401 - BPHYT_RS01925 0.48 -1.0
438,401 - BPHYT_RS01925 0.48 -0.2
438,401 - BPHYT_RS01925 0.48 +0.2
438,401 - BPHYT_RS01925 0.48 +0.0
438,401 - BPHYT_RS01925 0.48 -0.9
438,401 - BPHYT_RS01925 0.48 -0.0
438,401 - BPHYT_RS01925 0.48 +0.2
438,401 - BPHYT_RS01925 0.48 +0.6
438,401 - BPHYT_RS01925 0.48 -0.0
438,401 - BPHYT_RS01925 0.48 -0.0
438,402 + BPHYT_RS01925 0.48 -0.5
438,402 + BPHYT_RS01925 0.48 +0.5
438,402 + BPHYT_RS01925 0.48 +1.2
438,402 + BPHYT_RS01925 0.48 -0.6
438,402 + BPHYT_RS01925 0.48 +0.3
438,402 + BPHYT_RS01925 0.48 +1.1
438,402 + BPHYT_RS01925 0.48 +1.3
438,402 + BPHYT_RS01925 0.48 +0.4
438,403 - BPHYT_RS01925 0.48 -0.6
438,403 - BPHYT_RS01925 0.48 -1.2
438,403 - BPHYT_RS01925 0.48 -0.8
438,403 - BPHYT_RS01925 0.48 -0.2
438,403 - BPHYT_RS01925 0.48 -0.1
438,403 - BPHYT_RS01925 0.48 +1.4
438,403 - BPHYT_RS01925 0.48 +0.3
438,403 - BPHYT_RS01925 0.48 -0.6
438,403 - BPHYT_RS01925 0.48 -1.9
438,403 - BPHYT_RS01925 0.48 -1.4
438,403 - BPHYT_RS01925 0.48 -1.2
438,475 - BPHYT_RS01925 0.60 -0.5
438,475 - BPHYT_RS01925 0.60 +0.1
438,475 - BPHYT_RS01925 0.60 -0.1

Or see this region's nucleotide sequence