Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01905 and BPHYT_RS01910 are separated by 398 nucleotides BPHYT_RS01910 and BPHYT_RS01915 are separated by 330 nucleotides
BPHYT_RS01905: BPHYT_RS01905 - pyridoxamine 5'-phosphate oxidase, at 434,537 to 435,199
_RS01905
BPHYT_RS01910: BPHYT_RS01910 - H-NS histone, at 435,598 to 435,900
_RS01910
BPHYT_RS01915: BPHYT_RS01915 - cation diffusion facilitator family transporter, at 436,231 to 437,487
_RS01915
Position (kb) 435
436 Strain fitness (log2 ratio) -1
0
1 at 434.704 kb on + strand, within BPHYT_RS01905 at 434.705 kb on - strand, within BPHYT_RS01905 at 434.705 kb on - strand, within BPHYT_RS01905 at 434.844 kb on - strand, within BPHYT_RS01905 at 434.873 kb on + strand, within BPHYT_RS01905 at 434.873 kb on + strand, within BPHYT_RS01905 at 434.874 kb on - strand, within BPHYT_RS01905 at 434.874 kb on - strand, within BPHYT_RS01905 at 434.880 kb on + strand, within BPHYT_RS01905 at 434.881 kb on - strand, within BPHYT_RS01905 at 434.929 kb on + strand, within BPHYT_RS01905 at 434.929 kb on + strand, within BPHYT_RS01905 at 435.238 kb on + strand at 435.263 kb on + strand at 435.263 kb on + strand at 435.263 kb on + strand at 435.343 kb on + strand at 435.898 kb on + strand at 435.899 kb on - strand at 435.956 kb on + strand at 435.956 kb on + strand at 435.985 kb on + strand at 436.100 kb on - strand at 436.287 kb on + strand at 436.288 kb on - strand at 436.288 kb on - strand at 436.468 kb on + strand, within BPHYT_RS01915 at 436.468 kb on + strand, within BPHYT_RS01915 at 436.469 kb on - strand, within BPHYT_RS01915 at 436.477 kb on - strand, within BPHYT_RS01915 at 436.544 kb on + strand, within BPHYT_RS01915 at 436.545 kb on - strand, within BPHYT_RS01915 at 436.545 kb on - strand, within BPHYT_RS01915 at 436.596 kb on + strand, within BPHYT_RS01915 at 436.596 kb on + strand, within BPHYT_RS01915 at 436.597 kb on - strand, within BPHYT_RS01915 at 436.597 kb on - strand, within BPHYT_RS01915 at 436.597 kb on - strand, within BPHYT_RS01915 at 436.597 kb on - strand, within BPHYT_RS01915 at 436.620 kb on - strand, within BPHYT_RS01915 at 436.655 kb on - strand, within BPHYT_RS01915 at 436.756 kb on - strand, within BPHYT_RS01915
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 434,704 + BPHYT_RS01905 0.25 -0.5 434,705 - BPHYT_RS01905 0.25 -0.8 434,705 - BPHYT_RS01905 0.25 -0.5 434,844 - BPHYT_RS01905 0.46 -0.8 434,873 + BPHYT_RS01905 0.51 -0.1 434,873 + BPHYT_RS01905 0.51 -0.2 434,874 - BPHYT_RS01905 0.51 -0.5 434,874 - BPHYT_RS01905 0.51 +0.1 434,880 + BPHYT_RS01905 0.52 +0.2 434,881 - BPHYT_RS01905 0.52 -1.2 434,929 + BPHYT_RS01905 0.59 +0.7 434,929 + BPHYT_RS01905 0.59 +0.3 435,238 + +0.7 435,263 + -0.2 435,263 + -0.4 435,263 + +0.1 435,343 + -0.1 435,898 + -0.3 435,899 - -1.3 435,956 + +0.1 435,956 + -0.5 435,985 + -0.9 436,100 - +0.7 436,287 + +0.1 436,288 - -0.8 436,288 - -1.0 436,468 + BPHYT_RS01915 0.19 -0.5 436,468 + BPHYT_RS01915 0.19 -0.9 436,469 - BPHYT_RS01915 0.19 +0.2 436,477 - BPHYT_RS01915 0.20 -0.8 436,544 + BPHYT_RS01915 0.25 -0.5 436,545 - BPHYT_RS01915 0.25 +0.2 436,545 - BPHYT_RS01915 0.25 -0.1 436,596 + BPHYT_RS01915 0.29 +0.7 436,596 + BPHYT_RS01915 0.29 -0.5 436,597 - BPHYT_RS01915 0.29 -0.2 436,597 - BPHYT_RS01915 0.29 -0.7 436,597 - BPHYT_RS01915 0.29 -0.7 436,597 - BPHYT_RS01915 0.29 -0.2 436,620 - BPHYT_RS01915 0.31 -0.9 436,655 - BPHYT_RS01915 0.34 -0.7 436,756 - BPHYT_RS01915 0.42 -0.7
Or see this region's nucleotide sequence