Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01910

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01905 and BPHYT_RS01910 are separated by 398 nucleotidesBPHYT_RS01910 and BPHYT_RS01915 are separated by 330 nucleotides BPHYT_RS01905: BPHYT_RS01905 - pyridoxamine 5'-phosphate oxidase, at 434,537 to 435,199 _RS01905 BPHYT_RS01910: BPHYT_RS01910 - H-NS histone, at 435,598 to 435,900 _RS01910 BPHYT_RS01915: BPHYT_RS01915 - cation diffusion facilitator family transporter, at 436,231 to 437,487 _RS01915 Position (kb) 435 436Strain fitness (log2 ratio) -1 0 1at 434.704 kb on + strand, within BPHYT_RS01905at 434.705 kb on - strand, within BPHYT_RS01905at 434.705 kb on - strand, within BPHYT_RS01905at 434.844 kb on - strand, within BPHYT_RS01905at 434.873 kb on + strand, within BPHYT_RS01905at 434.873 kb on + strand, within BPHYT_RS01905at 434.874 kb on - strand, within BPHYT_RS01905at 434.874 kb on - strand, within BPHYT_RS01905at 434.880 kb on + strand, within BPHYT_RS01905at 434.881 kb on - strand, within BPHYT_RS01905at 434.929 kb on + strand, within BPHYT_RS01905at 434.929 kb on + strand, within BPHYT_RS01905at 435.238 kb on + strandat 435.263 kb on + strandat 435.263 kb on + strandat 435.263 kb on + strandat 435.343 kb on + strandat 435.898 kb on + strandat 435.899 kb on - strandat 435.956 kb on + strandat 435.956 kb on + strandat 435.985 kb on + strandat 436.100 kb on - strandat 436.287 kb on + strandat 436.288 kb on - strandat 436.288 kb on - strandat 436.468 kb on + strand, within BPHYT_RS01915at 436.468 kb on + strand, within BPHYT_RS01915at 436.469 kb on - strand, within BPHYT_RS01915at 436.477 kb on - strand, within BPHYT_RS01915at 436.544 kb on + strand, within BPHYT_RS01915at 436.545 kb on - strand, within BPHYT_RS01915at 436.545 kb on - strand, within BPHYT_RS01915at 436.596 kb on + strand, within BPHYT_RS01915at 436.596 kb on + strand, within BPHYT_RS01915at 436.597 kb on - strand, within BPHYT_RS01915at 436.597 kb on - strand, within BPHYT_RS01915at 436.597 kb on - strand, within BPHYT_RS01915at 436.597 kb on - strand, within BPHYT_RS01915at 436.620 kb on - strand, within BPHYT_RS01915at 436.655 kb on - strand, within BPHYT_RS01915at 436.756 kb on - strand, within BPHYT_RS01915

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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434,704 + BPHYT_RS01905 0.25 -0.5
434,705 - BPHYT_RS01905 0.25 -0.8
434,705 - BPHYT_RS01905 0.25 -0.5
434,844 - BPHYT_RS01905 0.46 -0.8
434,873 + BPHYT_RS01905 0.51 -0.1
434,873 + BPHYT_RS01905 0.51 -0.2
434,874 - BPHYT_RS01905 0.51 -0.5
434,874 - BPHYT_RS01905 0.51 +0.1
434,880 + BPHYT_RS01905 0.52 +0.2
434,881 - BPHYT_RS01905 0.52 -1.2
434,929 + BPHYT_RS01905 0.59 +0.7
434,929 + BPHYT_RS01905 0.59 +0.3
435,238 + +0.7
435,263 + -0.2
435,263 + -0.4
435,263 + +0.1
435,343 + -0.1
435,898 + -0.3
435,899 - -1.3
435,956 + +0.1
435,956 + -0.5
435,985 + -0.9
436,100 - +0.7
436,287 + +0.1
436,288 - -0.8
436,288 - -1.0
436,468 + BPHYT_RS01915 0.19 -0.5
436,468 + BPHYT_RS01915 0.19 -0.9
436,469 - BPHYT_RS01915 0.19 +0.2
436,477 - BPHYT_RS01915 0.20 -0.8
436,544 + BPHYT_RS01915 0.25 -0.5
436,545 - BPHYT_RS01915 0.25 +0.2
436,545 - BPHYT_RS01915 0.25 -0.1
436,596 + BPHYT_RS01915 0.29 +0.7
436,596 + BPHYT_RS01915 0.29 -0.5
436,597 - BPHYT_RS01915 0.29 -0.2
436,597 - BPHYT_RS01915 0.29 -0.7
436,597 - BPHYT_RS01915 0.29 -0.7
436,597 - BPHYT_RS01915 0.29 -0.2
436,620 - BPHYT_RS01915 0.31 -0.9
436,655 - BPHYT_RS01915 0.34 -0.7
436,756 - BPHYT_RS01915 0.42 -0.7

Or see this region's nucleotide sequence