Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01380

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01370 and BPHYT_RS01375 are separated by 4 nucleotidesBPHYT_RS01375 and BPHYT_RS01380 overlap by 4 nucleotidesBPHYT_RS01380 and BPHYT_RS01385 are separated by 80 nucleotides BPHYT_RS01370: BPHYT_RS01370 - cation ABC transporter substrate-binding protein, at 313,729 to 314,643 _RS01370 BPHYT_RS01375: BPHYT_RS01375 - ABC transporter, at 314,648 to 315,469 _RS01375 BPHYT_RS01380: BPHYT_RS01380 - cation ABC transporter permease, at 315,466 to 316,308 _RS01380 BPHYT_RS01385: BPHYT_RS01385 - cation ABC transporter permease, at 316,389 to 317,201 _RS01385 Position (kb) 315 316 317Strain fitness (log2 ratio) -2 -1 0 1 2at 314.525 kb on - strand, within BPHYT_RS01370at 314.555 kb on - strandat 314.555 kb on - strandat 314.641 kb on + strandat 314.642 kb on - strandat 314.707 kb on + strandat 314.707 kb on + strandat 314.707 kb on + strandat 314.707 kb on + strandat 314.707 kb on + strandat 314.708 kb on - strandat 314.708 kb on - strandat 314.732 kb on - strand, within BPHYT_RS01375at 314.732 kb on - strand, within BPHYT_RS01375at 314.876 kb on + strand, within BPHYT_RS01375at 314.876 kb on + strandat 314.906 kb on + strand, within BPHYT_RS01375at 314.906 kb on + strand, within BPHYT_RS01375at 314.907 kb on - strand, within BPHYT_RS01375at 314.907 kb on - strand, within BPHYT_RS01375at 314.960 kb on - strand, within BPHYT_RS01375at 315.050 kb on - strand, within BPHYT_RS01375at 315.050 kb on - strand, within BPHYT_RS01375at 315.275 kb on + strand, within BPHYT_RS01375at 315.275 kb on + strand, within BPHYT_RS01375at 315.275 kb on + strand, within BPHYT_RS01375at 315.347 kb on + strand, within BPHYT_RS01375at 315.348 kb on - strand, within BPHYT_RS01375at 315.348 kb on - strand, within BPHYT_RS01375at 315.348 kb on - strand, within BPHYT_RS01375at 315.354 kb on - strand, within BPHYT_RS01375at 315.535 kb on - strandat 315.545 kb on + strandat 315.642 kb on + strand, within BPHYT_RS01380at 315.727 kb on - strand, within BPHYT_RS01380at 315.820 kb on + strand, within BPHYT_RS01380at 315.821 kb on - strand, within BPHYT_RS01380at 315.958 kb on + strand, within BPHYT_RS01380at 315.974 kb on + strand, within BPHYT_RS01380at 315.975 kb on - strand, within BPHYT_RS01380at 315.975 kb on - strand, within BPHYT_RS01380at 316.019 kb on + strand, within BPHYT_RS01380at 316.020 kb on - strand, within BPHYT_RS01380at 316.020 kb on - strand, within BPHYT_RS01380at 316.020 kb on - strand, within BPHYT_RS01380at 316.080 kb on + strand, within BPHYT_RS01380at 316.231 kb on + strandat 316.231 kb on + strandat 316.231 kb on + strandat 316.231 kb on + strandat 316.231 kb on + strandat 316.231 kb on + strandat 316.232 kb on - strandat 316.232 kb on - strandat 316.232 kb on - strandat 316.232 kb on - strandat 316.232 kb on - strandat 316.234 kb on + strandat 316.234 kb on + strandat 316.235 kb on - strandat 316.297 kb on + strandat 316.297 kb on + strandat 316.297 kb on + strandat 316.298 kb on - strandat 316.412 kb on + strandat 316.413 kb on - strandat 316.413 kb on - strandat 316.413 kb on - strandat 316.413 kb on - strandat 316.655 kb on + strand, within BPHYT_RS01385at 316.655 kb on + strand, within BPHYT_RS01385at 316.719 kb on + strand, within BPHYT_RS01385at 316.720 kb on - strand, within BPHYT_RS01385at 316.741 kb on + strand, within BPHYT_RS01385at 316.742 kb on - strand, within BPHYT_RS01385at 316.742 kb on - strand, within BPHYT_RS01385at 316.942 kb on + strand, within BPHYT_RS01385at 316.943 kb on - strand, within BPHYT_RS01385at 317.082 kb on + strand, within BPHYT_RS01385at 317.082 kb on + strand, within BPHYT_RS01385at 317.082 kb on + strand, within BPHYT_RS01385at 317.082 kb on + strand, within BPHYT_RS01385at 317.083 kb on - strand, within BPHYT_RS01385at 317.083 kb on - strand, within BPHYT_RS01385at 317.083 kb on - strand, within BPHYT_RS01385at 317.083 kb on - strand, within BPHYT_RS01385at 317.134 kb on + strandat 317.134 kb on + strandat 317.134 kb on + strandat 317.134 kb on + strandat 317.135 kb on - strandat 317.135 kb on - strandat 317.136 kb on + strandat 317.136 kb on + strandat 317.136 kb on + strandat 317.137 kb on - strandat 317.199 kb on + strandat 317.200 kb on - strandat 317.267 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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314,525 - BPHYT_RS01370 0.87 -1.3
314,555 - +0.5
314,555 - -1.0
314,641 + +0.4
314,642 - -0.1
314,707 + +0.3
314,707 + +0.4
314,707 + +0.5
314,707 + -0.8
314,707 + -0.3
314,708 - -0.1
314,708 - -0.2
314,732 - BPHYT_RS01375 0.10 +0.7
314,732 - BPHYT_RS01375 0.10 -0.1
314,876 + BPHYT_RS01375 0.28 -0.3
314,876 + +2.0
314,906 + BPHYT_RS01375 0.31 +0.0
314,906 + BPHYT_RS01375 0.31 +0.7
314,907 - BPHYT_RS01375 0.32 +0.5
314,907 - BPHYT_RS01375 0.32 +0.4
314,960 - BPHYT_RS01375 0.38 -0.3
315,050 - BPHYT_RS01375 0.49 -0.4
315,050 - BPHYT_RS01375 0.49 -0.4
315,275 + BPHYT_RS01375 0.76 +0.6
315,275 + BPHYT_RS01375 0.76 +0.1
315,275 + BPHYT_RS01375 0.76 +0.5
315,347 + BPHYT_RS01375 0.85 -0.7
315,348 - BPHYT_RS01375 0.85 -0.5
315,348 - BPHYT_RS01375 0.85 -0.5
315,348 - BPHYT_RS01375 0.85 -1.1
315,354 - BPHYT_RS01375 0.86 +0.8
315,535 - +0.1
315,545 + +0.3
315,642 + BPHYT_RS01380 0.21 -0.7
315,727 - BPHYT_RS01380 0.31 -0.1
315,820 + BPHYT_RS01380 0.42 +2.0
315,821 - BPHYT_RS01380 0.42 -0.2
315,958 + BPHYT_RS01380 0.58 +0.1
315,974 + BPHYT_RS01380 0.60 -0.6
315,975 - BPHYT_RS01380 0.60 -1.0
315,975 - BPHYT_RS01380 0.60 -1.6
316,019 + BPHYT_RS01380 0.66 -2.0
316,020 - BPHYT_RS01380 0.66 +0.1
316,020 - BPHYT_RS01380 0.66 -0.5
316,020 - BPHYT_RS01380 0.66 -1.8
316,080 + BPHYT_RS01380 0.73 -0.7
316,231 + +0.1
316,231 + -0.3
316,231 + +0.3
316,231 + +1.4
316,231 + +0.0
316,231 + +0.2
316,232 - +0.0
316,232 - -1.0
316,232 - +0.2
316,232 - +0.4
316,232 - -0.4
316,234 + +0.6
316,234 + +0.6
316,235 - +0.9
316,297 + -0.9
316,297 + +0.3
316,297 + +0.9
316,298 - -1.1
316,412 + +0.7
316,413 - -0.1
316,413 - -2.0
316,413 - +1.4
316,413 - -0.1
316,655 + BPHYT_RS01385 0.33 -0.2
316,655 + BPHYT_RS01385 0.33 +0.2
316,719 + BPHYT_RS01385 0.41 -0.2
316,720 - BPHYT_RS01385 0.41 -0.7
316,741 + BPHYT_RS01385 0.43 -0.3
316,742 - BPHYT_RS01385 0.43 +0.5
316,742 - BPHYT_RS01385 0.43 -0.2
316,942 + BPHYT_RS01385 0.68 -1.0
316,943 - BPHYT_RS01385 0.68 -0.5
317,082 + BPHYT_RS01385 0.85 -0.3
317,082 + BPHYT_RS01385 0.85 -0.1
317,082 + BPHYT_RS01385 0.85 -0.2
317,082 + BPHYT_RS01385 0.85 -0.1
317,083 - BPHYT_RS01385 0.85 -1.1
317,083 - BPHYT_RS01385 0.85 -0.8
317,083 - BPHYT_RS01385 0.85 -1.0
317,083 - BPHYT_RS01385 0.85 -1.0
317,134 + +0.1
317,134 + -0.4
317,134 + +1.4
317,134 + -1.0
317,135 - +0.7
317,135 - +0.1
317,136 + -0.7
317,136 + -0.2
317,136 + +2.0
317,137 - +0.1
317,199 + -0.3
317,200 - +0.0
317,267 + -0.4

Or see this region's nucleotide sequence