Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35680 and BPHYT_RS35685 are separated by 173 nucleotides BPHYT_RS35685 and BPHYT_RS35690 are separated by 12 nucleotides BPHYT_RS35690 and BPHYT_RS35695 overlap by 4 nucleotides
BPHYT_RS35680: BPHYT_RS35680 - sugar ABC transporter ATP-binding protein, at 3,596,710 to 3,597,792
_RS35680
BPHYT_RS35685: BPHYT_RS35685 - RpiR family transcriptional regulator, at 3,597,966 to 3,598,829
_RS35685
BPHYT_RS35690: BPHYT_RS35690 - IclR family transcriptional regulator, at 3,598,842 to 3,599,729
_RS35690
BPHYT_RS35695: BPHYT_RS35695 - IclR family transcriptional regulator, at 3,599,726 to 3,600,613
_RS35695
Position (kb) 3597
3598
3599 Strain fitness (log2 ratio) -1
0
1
2 at 3596.968 kb on + strand, within BPHYT_RS35680 at 3597.751 kb on - strand at 3597.751 kb on - strand at 3597.864 kb on + strand at 3597.865 kb on - strand at 3598.844 kb on - strand at 3599.243 kb on - strand, within BPHYT_RS35690
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 3,596,968 + BPHYT_RS35680 0.24 +2.0 3,597,751 - -1.5 3,597,751 - +2.7 3,597,864 + +0.6 3,597,865 - +1.0 3,598,844 - +0.0 3,599,243 - BPHYT_RS35690 0.45 -0.4
Or see this region's nucleotide sequence