Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS34420 and BPHYT_RS34425 are separated by 41 nucleotides BPHYT_RS34425 and BPHYT_RS34430 are separated by 31 nucleotides BPHYT_RS34430 and BPHYT_RS34435 are separated by 43 nucleotides
BPHYT_RS34420: BPHYT_RS34420 - AraC family transcriptional regulator, at 3,329,078 to 3,329,995
_RS34420
BPHYT_RS34425: BPHYT_RS34425 - lactate dehydrogenase, at 3,330,037 to 3,333,060
_RS34425
BPHYT_RS34430: BPHYT_RS34430 - 2-keto-4-pentenoate hydratase, at 3,333,092 to 3,333,841
_RS34430
BPHYT_RS34435: BPHYT_RS34435 - MFS transporter, at 3,333,885 to 3,335,168
_RS34435
Position (kb) 3330
3331
3332
3333
3334 Strain fitness (log2 ratio) -1
0
1
2
3 at 3329.064 kb on - strand at 3329.285 kb on + strand, within BPHYT_RS34420 at 3329.285 kb on + strand, within BPHYT_RS34420 at 3329.333 kb on + strand, within BPHYT_RS34420 at 3329.420 kb on + strand, within BPHYT_RS34420 at 3329.533 kb on - strand, within BPHYT_RS34420 at 3329.533 kb on - strand, within BPHYT_RS34420 at 3329.702 kb on + strand, within BPHYT_RS34420 at 3329.702 kb on + strand, within BPHYT_RS34420 at 3330.039 kb on - strand at 3330.039 kb on - strand at 3330.268 kb on + strand at 3330.480 kb on - strand, within BPHYT_RS34425 at 3330.678 kb on + strand, within BPHYT_RS34425 at 3331.042 kb on - strand, within BPHYT_RS34425 at 3331.383 kb on + strand, within BPHYT_RS34425 at 3331.383 kb on + strand, within BPHYT_RS34425 at 3331.384 kb on - strand, within BPHYT_RS34425 at 3331.387 kb on + strand, within BPHYT_RS34425 at 3331.403 kb on + strand, within BPHYT_RS34425 at 3331.609 kb on + strand, within BPHYT_RS34425 at 3331.716 kb on - strand, within BPHYT_RS34425 at 3332.196 kb on + strand, within BPHYT_RS34425 at 3332.342 kb on + strand, within BPHYT_RS34425 at 3332.898 kb on - strand at 3333.072 kb on - strand at 3333.097 kb on - strand at 3333.178 kb on - strand, within BPHYT_RS34430 at 3333.841 kb on + strand at 3333.842 kb on - strand at 3334.027 kb on + strand, within BPHYT_RS34435
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 3,329,064 - -0.6 3,329,285 + BPHYT_RS34420 0.23 +1.6 3,329,285 + BPHYT_RS34420 0.23 -0.0 3,329,333 + BPHYT_RS34420 0.28 -0.2 3,329,420 + BPHYT_RS34420 0.37 -0.2 3,329,533 - BPHYT_RS34420 0.50 +2.2 3,329,533 - BPHYT_RS34420 0.50 +1.2 3,329,702 + BPHYT_RS34420 0.68 +0.0 3,329,702 + BPHYT_RS34420 0.68 -0.1 3,330,039 - -0.1 3,330,039 - -1.1 3,330,268 + -0.4 3,330,480 - BPHYT_RS34425 0.15 +0.6 3,330,678 + BPHYT_RS34425 0.21 -0.2 3,331,042 - BPHYT_RS34425 0.33 +0.9 3,331,383 + BPHYT_RS34425 0.45 -0.6 3,331,383 + BPHYT_RS34425 0.45 -1.2 3,331,384 - BPHYT_RS34425 0.45 +0.8 3,331,387 + BPHYT_RS34425 0.45 +0.2 3,331,403 + BPHYT_RS34425 0.45 +0.4 3,331,609 + BPHYT_RS34425 0.52 +0.2 3,331,716 - BPHYT_RS34425 0.56 +0.4 3,332,196 + BPHYT_RS34425 0.71 -0.6 3,332,342 + BPHYT_RS34425 0.76 +0.3 3,332,898 - +0.0 3,333,072 - -0.3 3,333,097 - +0.5 3,333,178 - BPHYT_RS34430 0.11 +2.8 3,333,841 + +0.5 3,333,842 - +1.9 3,334,027 + BPHYT_RS34435 0.11 -0.0
Or see this region's nucleotide sequence