Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS34205 and BPHYT_RS34210 are separated by 105 nucleotides BPHYT_RS34210 and BPHYT_RS34215 are separated by 66 nucleotides BPHYT_RS34215 and BPHYT_RS34220 are separated by 44 nucleotides
BPHYT_RS34205: BPHYT_RS34205 - pyridoxal-dependent decarboxylase, at 3,276,404 to 3,277,759
_RS34205
BPHYT_RS34210: BPHYT_RS34210 - 2,4-diketo-3-deoxy-L-rhamnonate hydrolase (EC 3.7.1.-) <small>(from data)</small>, at 3,277,865 to 3,278,713
_RS34210
BPHYT_RS34215: BPHYT_RS34215 - 2-keto-3-deoxy-L-fuconate 4-dehydrogenase FucDH <small>(from data)</small>, at 3,278,780 to 3,279,523
_RS34215
BPHYT_RS34220: BPHYT_RS34220 - L-fucono-1,5-lactonase <small>(from data)</small>, at 3,279,568 to 3,280,398
_RS34220
Position (kb) 3277
3278
3279 Strain fitness (log2 ratio) -1
0
1
2 at 3276.997 kb on + strand, within BPHYT_RS34205 at 3276.998 kb on - strand, within BPHYT_RS34205 at 3277.713 kb on + strand at 3277.775 kb on - strand at 3277.791 kb on + strand at 3277.792 kb on - strand at 3278.265 kb on + strand, within BPHYT_RS34210 at 3278.277 kb on + strand, within BPHYT_RS34210 at 3278.278 kb on - strand, within BPHYT_RS34210 at 3278.278 kb on - strand, within BPHYT_RS34210 at 3278.278 kb on - strand, within BPHYT_RS34210 at 3278.302 kb on + strand, within BPHYT_RS34210 at 3278.304 kb on + strand, within BPHYT_RS34210 at 3278.304 kb on + strand, within BPHYT_RS34210 at 3278.305 kb on - strand, within BPHYT_RS34210 at 3278.476 kb on - strand, within BPHYT_RS34210 at 3278.850 kb on + strand at 3278.851 kb on - strand at 3278.851 kb on - strand at 3278.851 kb on - strand at 3279.016 kb on + strand, within BPHYT_RS34215 at 3279.024 kb on - strand, within BPHYT_RS34215 at 3279.142 kb on + strand, within BPHYT_RS34215 at 3279.143 kb on - strand, within BPHYT_RS34215 at 3279.143 kb on - strand, within BPHYT_RS34215 at 3279.143 kb on - strand, within BPHYT_RS34215 at 3279.204 kb on + strand, within BPHYT_RS34215 at 3279.204 kb on + strand, within BPHYT_RS34215 at 3279.205 kb on - strand, within BPHYT_RS34215 at 3279.525 kb on + strand at 3279.525 kb on + strand at 3279.526 kb on - strand at 3279.526 kb on - strand at 3279.671 kb on + strand, within BPHYT_RS34220 at 3279.672 kb on - strand, within BPHYT_RS34220
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 3,276,997 + BPHYT_RS34205 0.44 +0.0 3,276,998 - BPHYT_RS34205 0.44 +0.2 3,277,713 + +0.0 3,277,775 - -0.6 3,277,791 + -1.0 3,277,792 - -0.9 3,278,265 + BPHYT_RS34210 0.47 +0.8 3,278,277 + BPHYT_RS34210 0.49 +0.3 3,278,278 - BPHYT_RS34210 0.49 -0.4 3,278,278 - BPHYT_RS34210 0.49 +2.1 3,278,278 - BPHYT_RS34210 0.49 -1.0 3,278,302 + BPHYT_RS34210 0.51 +2.2 3,278,304 + BPHYT_RS34210 0.52 +1.8 3,278,304 + BPHYT_RS34210 0.52 +1.6 3,278,305 - BPHYT_RS34210 0.52 +0.0 3,278,476 - BPHYT_RS34210 0.72 -0.5 3,278,850 + +0.1 3,278,851 - -0.4 3,278,851 - +0.4 3,278,851 - +0.2 3,279,016 + BPHYT_RS34215 0.32 -0.3 3,279,024 - BPHYT_RS34215 0.33 +0.9 3,279,142 + BPHYT_RS34215 0.49 -0.2 3,279,143 - BPHYT_RS34215 0.49 +0.0 3,279,143 - BPHYT_RS34215 0.49 +0.2 3,279,143 - BPHYT_RS34215 0.49 +0.2 3,279,204 + BPHYT_RS34215 0.57 +0.0 3,279,204 + BPHYT_RS34215 0.57 -0.4 3,279,205 - BPHYT_RS34215 0.57 -0.2 3,279,525 + +1.1 3,279,525 + -0.4 3,279,526 - +0.2 3,279,526 - +2.6 3,279,671 + BPHYT_RS34220 0.12 -0.4 3,279,672 - BPHYT_RS34220 0.13 -0.2
Or see this region's nucleotide sequence