Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31860

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31855 and BPHYT_RS31860 are separated by 764 nucleotidesBPHYT_RS31860 and BPHYT_RS31865 are separated by 34 nucleotides BPHYT_RS31855: BPHYT_RS31855 - FAD-linked oxidase, at 2,705,635 to 2,707,251 _RS31855 BPHYT_RS31860: BPHYT_RS31860 - alcohol dehydrogenase, at 2,708,016 to 2,709,197 _RS31860 BPHYT_RS31865: BPHYT_RS31865 - NIPSNAP family containing protein, at 2,709,232 to 2,709,573 _RS31865 Position (kb) 2708 2709 2710Strain fitness (log2 ratio) -2 -1 0 1at 2707.070 kb on - strand, within BPHYT_RS31855at 2707.371 kb on + strandat 2707.788 kb on + strandat 2709.148 kb on + strandat 2709.947 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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2,707,070 - BPHYT_RS31855 0.89 +0.0
2,707,371 + -2.3
2,707,788 + +0.9
2,709,148 + -0.5
2,709,947 - -1.7

Or see this region's nucleotide sequence