Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28520 and BPHYT_RS28525 are separated by 281 nucleotides BPHYT_RS28525 and BPHYT_RS28530 are separated by 28 nucleotides BPHYT_RS28530 and BPHYT_RS28535 are separated by 58 nucleotides
BPHYT_RS28520: BPHYT_RS28520 - hypothetical protein, at 1,953,837 to 1,955,438
_RS28520
BPHYT_RS28525: BPHYT_RS28525 - amidase, at 1,955,720 to 1,957,240
_RS28525
BPHYT_RS28530: BPHYT_RS28530 - 3-ketoacyl-ACP reductase, at 1,957,269 to 1,958,033
_RS28530
BPHYT_RS28535: BPHYT_RS28535 - response regulator receiver, at 1,958,092 to 1,958,742
_RS28535
Position (kb) 1955
1956
1957
1958 Strain fitness (log2 ratio) -2
-1
0
1 at 1954.801 kb on - strand, within BPHYT_RS28520 at 1955.208 kb on - strand, within BPHYT_RS28520 at 1955.222 kb on - strand, within BPHYT_RS28520 at 1955.495 kb on - strand at 1955.584 kb on + strand at 1955.759 kb on + strand at 1955.823 kb on + strand at 1956.076 kb on + strand, within BPHYT_RS28525 at 1956.077 kb on - strand, within BPHYT_RS28525 at 1956.187 kb on - strand, within BPHYT_RS28525 at 1956.342 kb on + strand, within BPHYT_RS28525 at 1956.393 kb on + strand, within BPHYT_RS28525 at 1956.394 kb on - strand, within BPHYT_RS28525 at 1956.931 kb on - strand, within BPHYT_RS28525 at 1957.266 kb on - strand at 1957.837 kb on - strand, within BPHYT_RS28530 at 1958.100 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,954,801 - BPHYT_RS28520 0.60 -0.1 1,955,208 - BPHYT_RS28520 0.86 +1.3 1,955,222 - BPHYT_RS28520 0.86 -0.6 1,955,495 - +0.1 1,955,584 + -0.1 1,955,759 + +1.2 1,955,823 + +1.1 1,956,076 + BPHYT_RS28525 0.23 +0.8 1,956,077 - BPHYT_RS28525 0.23 -0.8 1,956,187 - BPHYT_RS28525 0.31 +0.3 1,956,342 + BPHYT_RS28525 0.41 -0.3 1,956,393 + BPHYT_RS28525 0.44 -2.2 1,956,394 - BPHYT_RS28525 0.44 +0.8 1,956,931 - BPHYT_RS28525 0.80 +0.4 1,957,266 - +1.0 1,957,837 - BPHYT_RS28530 0.74 -0.0 1,958,100 + +1.1
Or see this region's nucleotide sequence