Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25250 and BPHYT_RS25255 are separated by 57 nucleotides BPHYT_RS25255 and BPHYT_RS25260 are separated by 110 nucleotides BPHYT_RS25260 and BPHYT_RS25265 are separated by 33 nucleotides
BPHYT_RS25250: BPHYT_RS25250 - porin, at 1,239,379 to 1,240,527
_RS25250
BPHYT_RS25255: BPHYT_RS25255 - LysR family transcriptional regulator, at 1,240,585 to 1,241,505
_RS25255
BPHYT_RS25260: BPHYT_RS25260 - glutathione S-transferase, at 1,241,616 to 1,242,257
_RS25260
BPHYT_RS25265: BPHYT_RS25265 - pyridoxamine 5'-phosphate oxidase, at 1,242,291 to 1,244,339
_RS25265
Position (kb) 1240
1241
1242 Strain fitness (log2 ratio) -1
0
1
2 at 1239.694 kb on + strand, within BPHYT_RS25250 at 1240.031 kb on - strand, within BPHYT_RS25250 at 1240.127 kb on - strand, within BPHYT_RS25250 at 1242.046 kb on + strand, within BPHYT_RS25260 at 1242.302 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,239,694 + BPHYT_RS25250 0.27 +0.8 1,240,031 - BPHYT_RS25250 0.57 +2.4 1,240,127 - BPHYT_RS25250 0.65 -0.2 1,242,046 + BPHYT_RS25260 0.67 -1.1 1,242,302 + -0.4
Or see this region's nucleotide sequence