Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25010 and BPHYT_RS25015 are separated by 239 nucleotides BPHYT_RS25015 and BPHYT_RS25020 are separated by 138 nucleotides BPHYT_RS25020 and BPHYT_RS25025 are separated by 305 nucleotides
BPHYT_RS25010: BPHYT_RS25010 - N5,N10-methylene tetrahydromethanopterin reductase, at 1,180,617 to 1,182,008
_RS25010
BPHYT_RS25015: BPHYT_RS25015 - XRE family transcriptional regulator, at 1,182,248 to 1,182,817
_RS25015
BPHYT_RS25020: BPHYT_RS25020 - phospholipid-binding protein, at 1,182,956 to 1,183,315
_RS25020
BPHYT_RS25025: BPHYT_RS25025 - acyl-CoA dehydrogenase, at 1,183,621 to 1,185,426
_RS25025
Position (kb) 1182
1183 Strain fitness (log2 ratio) -1
0
1
2 at 1181.336 kb on - strand, within BPHYT_RS25010 at 1181.441 kb on - strand, within BPHYT_RS25010 at 1181.503 kb on + strand, within BPHYT_RS25010 at 1181.504 kb on - strand, within BPHYT_RS25010 at 1181.519 kb on - strand, within BPHYT_RS25010 at 1181.672 kb on - strand, within BPHYT_RS25010 at 1181.672 kb on - strand, within BPHYT_RS25010 at 1181.897 kb on - strand at 1181.901 kb on + strand at 1181.909 kb on + strand at 1181.910 kb on - strand at 1182.097 kb on - strand at 1182.201 kb on - strand at 1182.513 kb on + strand, within BPHYT_RS25015 at 1182.513 kb on + strand, within BPHYT_RS25015 at 1182.707 kb on + strand, within BPHYT_RS25015 at 1182.815 kb on + strand at 1182.815 kb on + strand at 1182.829 kb on + strand at 1183.248 kb on + strand, within BPHYT_RS25020 at 1183.414 kb on - strand at 1183.448 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,181,336 - BPHYT_RS25010 0.52 -0.3 1,181,441 - BPHYT_RS25010 0.59 +0.9 1,181,503 + BPHYT_RS25010 0.64 -0.4 1,181,504 - BPHYT_RS25010 0.64 +0.5 1,181,519 - BPHYT_RS25010 0.65 +1.2 1,181,672 - BPHYT_RS25010 0.76 +0.1 1,181,672 - BPHYT_RS25010 0.76 -1.0 1,181,897 - +0.2 1,181,901 + +0.3 1,181,909 + -0.8 1,181,910 - -1.1 1,182,097 - +0.4 1,182,201 - +1.2 1,182,513 + BPHYT_RS25015 0.46 +0.4 1,182,513 + BPHYT_RS25015 0.46 +1.8 1,182,707 + BPHYT_RS25015 0.81 +0.0 1,182,815 + -1.5 1,182,815 + +1.6 1,182,829 + +0.8 1,183,248 + BPHYT_RS25020 0.81 +1.9 1,183,414 - +0.1 1,183,448 - +0.1
Or see this region's nucleotide sequence