Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24775 and BPHYT_RS24780 are separated by 240 nucleotides BPHYT_RS24780 and BPHYT_RS24785 are separated by 65 nucleotides BPHYT_RS24785 and BPHYT_RS24790 are separated by 91 nucleotides
BPHYT_RS24775: BPHYT_RS24775 - helicase, at 1,123,963 to 1,127,430
_RS24775
BPHYT_RS24780: BPHYT_RS24780 - hypothetical protein, at 1,127,671 to 1,127,919
_RS24780
BPHYT_RS24785: BPHYT_RS24785 - peptidase M23, at 1,127,985 to 1,128,788
_RS24785
BPHYT_RS24790: BPHYT_RS24790 - lipoprotein, at 1,128,880 to 1,129,506
_RS24790
Position (kb) 1127
1128
1129 Strain fitness (log2 ratio) -1
0
1
2
3 at 1127.032 kb on + strand, within BPHYT_RS24775 at 1127.033 kb on - strand, within BPHYT_RS24775 at 1127.033 kb on - strand, within BPHYT_RS24775 at 1127.258 kb on - strand at 1127.429 kb on - strand at 1127.775 kb on + strand, within BPHYT_RS24780 at 1127.918 kb on - strand at 1128.029 kb on - strand at 1128.031 kb on + strand at 1128.032 kb on - strand at 1128.621 kb on + strand, within BPHYT_RS24785 at 1128.768 kb on + strand at 1128.886 kb on - strand at 1128.901 kb on + strand at 1129.258 kb on + strand, within BPHYT_RS24790 at 1129.400 kb on + strand, within BPHYT_RS24790 at 1129.400 kb on + strand, within BPHYT_RS24790 at 1129.400 kb on + strand, within BPHYT_RS24790 at 1129.483 kb on + strand at 1129.616 kb on + strand at 1129.696 kb on + strand at 1129.696 kb on + strand at 1129.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,127,032 + BPHYT_RS24775 0.88 -1.5 1,127,033 - BPHYT_RS24775 0.89 -0.0 1,127,033 - BPHYT_RS24775 0.89 -1.4 1,127,258 - -0.2 1,127,429 - +3.3 1,127,775 + BPHYT_RS24780 0.42 +0.8 1,127,918 - +0.1 1,128,029 - +0.3 1,128,031 + -1.0 1,128,032 - +1.0 1,128,621 + BPHYT_RS24785 0.79 -0.2 1,128,768 + +0.6 1,128,886 - +0.0 1,128,901 + +0.1 1,129,258 + BPHYT_RS24790 0.60 -0.2 1,129,400 + BPHYT_RS24790 0.83 -1.1 1,129,400 + BPHYT_RS24790 0.83 -0.3 1,129,400 + BPHYT_RS24790 0.83 -0.4 1,129,483 + -0.4 1,129,616 + +1.8 1,129,696 + -0.4 1,129,696 + -1.4 1,129,715 - -1.0
Or see this region's nucleotide sequence