Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24075

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24070 and BPHYT_RS24075 are separated by 378 nucleotidesBPHYT_RS24075 and BPHYT_RS24080 are separated by 191 nucleotides BPHYT_RS24070: BPHYT_RS24070 - hypothetical protein, at 966,728 to 967,519 _RS24070 BPHYT_RS24075: BPHYT_RS24075 - ATPase, at 967,898 to 969,865 _RS24075 BPHYT_RS24080: BPHYT_RS24080 - LuxR family transcriptional regulator, at 970,057 to 970,830 _RS24080 Position (kb) 967 968 969 970Strain fitness (log2 ratio) -1 0 1 2at 967.154 kb on - strand, within BPHYT_RS24070at 967.227 kb on + strand, within BPHYT_RS24070at 967.445 kb on - strandat 967.622 kb on - strandat 967.648 kb on + strandat 967.656 kb on - strandat 967.663 kb on - strandat 967.709 kb on + strandat 967.722 kb on + strandat 969.062 kb on + strand, within BPHYT_RS24075at 969.690 kb on + strandat 969.714 kb on + strandat 969.863 kb on + strandat 970.302 kb on + strand, within BPHYT_RS24080

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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967,154 - BPHYT_RS24070 0.54 +1.0
967,227 + BPHYT_RS24070 0.63 -0.2
967,445 - +1.2
967,622 - -0.5
967,648 + +0.0
967,656 - +0.0
967,663 - -0.4
967,709 + -0.9
967,722 + +1.0
969,062 + BPHYT_RS24075 0.59 +2.2
969,690 + +0.6
969,714 + -1.4
969,863 + +0.3
970,302 + BPHYT_RS24080 0.32 +0.9

Or see this region's nucleotide sequence