Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22395 and BPHYT_RS22400 are separated by 181 nucleotides BPHYT_RS22400 and BPHYT_RS22405 are separated by 57 nucleotides BPHYT_RS22405 and BPHYT_RS22410 are separated by 70 nucleotides BPHYT_RS22410 and BPHYT_RS22415 overlap by 4 nucleotides
BPHYT_RS22395: BPHYT_RS22395 - AraC family transcriptional regulator, at 580,497 to 581,450
_RS22395
BPHYT_RS22400: BPHYT_RS22400 - hypothetical protein, at 581,632 to 581,958
_RS22400
BPHYT_RS22405: BPHYT_RS22405 - HxlR family transcriptional regulator, at 582,016 to 582,417
_RS22405
BPHYT_RS22410: BPHYT_RS22410 - hypothetical protein, at 582,488 to 582,913
_RS22410
BPHYT_RS22415: BPHYT_RS22415 - nitrite reductase, at 582,910 to 584,700
_RS22415
Position (kb) 581
582 Strain fitness (log2 ratio) -1
0
1 at 580.743 kb on + strand, within BPHYT_RS22395 at 580.743 kb on + strand, within BPHYT_RS22395 at 580.958 kb on + strand, within BPHYT_RS22395 at 581.275 kb on - strand, within BPHYT_RS22395 at 581.547 kb on - strand at 581.548 kb on + strand at 581.552 kb on + strand at 581.553 kb on - strand at 581.553 kb on - strand at 581.562 kb on + strand at 581.794 kb on + strand, within BPHYT_RS22400 at 581.926 kb on + strand at 581.944 kb on - strand at 581.975 kb on + strand at 581.975 kb on + strand at 581.976 kb on - strand at 581.979 kb on - strand at 582.006 kb on - strand at 582.017 kb on + strand at 582.417 kb on + strand at 582.538 kb on + strand, within BPHYT_RS22410 at 582.539 kb on - strand, within BPHYT_RS22410 at 582.539 kb on - strand, within BPHYT_RS22410 at 582.552 kb on + strand, within BPHYT_RS22410 at 582.721 kb on - strand, within BPHYT_RS22410 at 582.733 kb on - strand, within BPHYT_RS22410
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 580,743 + BPHYT_RS22395 0.26 +0.2 580,743 + BPHYT_RS22395 0.26 -0.9 580,958 + BPHYT_RS22395 0.48 +0.3 581,275 - BPHYT_RS22395 0.82 +0.1 581,547 - -1.5 581,548 + -0.8 581,552 + -1.1 581,553 - -0.9 581,553 - -0.3 581,562 + -0.8 581,794 + BPHYT_RS22400 0.50 -1.7 581,926 + +0.2 581,944 - +1.7 581,975 + -0.8 581,975 + -0.1 581,976 - +1.1 581,979 - +0.8 582,006 - -0.3 582,017 + -0.5 582,417 + -0.2 582,538 + BPHYT_RS22410 0.12 +1.6 582,539 - BPHYT_RS22410 0.12 -0.1 582,539 - BPHYT_RS22410 0.12 +0.0 582,552 + BPHYT_RS22410 0.15 -0.0 582,721 - BPHYT_RS22410 0.55 -0.3 582,733 - BPHYT_RS22410 0.58 -0.3
Or see this region's nucleotide sequence