Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20850 and BPHYT_RS20855 are separated by 126 nucleotides BPHYT_RS20855 and BPHYT_RS20860 are separated by 204 nucleotides BPHYT_RS20860 and BPHYT_RS20865 are separated by 33 nucleotides
BPHYT_RS20850: BPHYT_RS20850 - multidrug DMT transporter permease, at 240,281 to 241,123
_RS20850
BPHYT_RS20855: BPHYT_RS20855 - transcriptional regulator, at 241,250 to 242,158
_RS20855
BPHYT_RS20860: BPHYT_RS20860 - hypothetical protein, at 242,363 to 242,686
_RS20860
BPHYT_RS20865: BPHYT_RS20865 - 2-hydroxyacid dehydrogenase, at 242,720 to 243,685
_RS20865
Position (kb) 241
242
243 Strain fitness (log2 ratio) -1
0
1
2 at 240.460 kb on - strand, within BPHYT_RS20850 at 240.606 kb on + strand, within BPHYT_RS20850 at 240.661 kb on - strand, within BPHYT_RS20850 at 240.661 kb on - strand, within BPHYT_RS20850 at 241.184 kb on + strand at 241.184 kb on + strand at 241.185 kb on - strand at 241.188 kb on + strand at 241.196 kb on - strand at 241.216 kb on - strand at 241.216 kb on - strand at 241.339 kb on - strand at 241.673 kb on + strand, within BPHYT_RS20855 at 241.674 kb on - strand, within BPHYT_RS20855 at 241.709 kb on + strand, within BPHYT_RS20855 at 241.709 kb on + strand, within BPHYT_RS20855 at 241.709 kb on + strand, within BPHYT_RS20855 at 241.710 kb on - strand, within BPHYT_RS20855 at 241.710 kb on - strand, within BPHYT_RS20855 at 241.710 kb on - strand, within BPHYT_RS20855 at 241.715 kb on + strand, within BPHYT_RS20855 at 241.829 kb on - strand, within BPHYT_RS20855 at 241.953 kb on + strand, within BPHYT_RS20855 at 241.954 kb on - strand, within BPHYT_RS20855 at 242.060 kb on + strand, within BPHYT_RS20855 at 242.061 kb on - strand, within BPHYT_RS20855 at 242.128 kb on + strand at 242.229 kb on + strand at 242.785 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 240,460 - BPHYT_RS20850 0.21 +0.6 240,606 + BPHYT_RS20850 0.39 +0.5 240,661 - BPHYT_RS20850 0.45 -0.6 240,661 - BPHYT_RS20850 0.45 +2.4 241,184 + -0.1 241,184 + -1.5 241,185 - -0.9 241,188 + +1.1 241,196 - +0.3 241,216 - -1.2 241,216 - -0.3 241,339 - -0.0 241,673 + BPHYT_RS20855 0.47 -1.1 241,674 - BPHYT_RS20855 0.47 -0.1 241,709 + BPHYT_RS20855 0.50 -0.2 241,709 + BPHYT_RS20855 0.50 -0.5 241,709 + BPHYT_RS20855 0.50 +0.1 241,710 - BPHYT_RS20855 0.51 +0.3 241,710 - BPHYT_RS20855 0.51 -0.2 241,710 - BPHYT_RS20855 0.51 -0.2 241,715 + BPHYT_RS20855 0.51 -1.1 241,829 - BPHYT_RS20855 0.64 -1.1 241,953 + BPHYT_RS20855 0.77 -0.6 241,954 - BPHYT_RS20855 0.77 -0.1 242,060 + BPHYT_RS20855 0.89 -0.3 242,061 - BPHYT_RS20855 0.89 -0.5 242,128 + +0.1 242,229 + -0.9 242,785 - +0.4
Or see this region's nucleotide sequence