Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18355

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS18350 and BPHYT_RS18355 are separated by 174 nucleotidesBPHYT_RS18355 and BPHYT_RS18360 are separated by 271 nucleotidesBPHYT_RS18360 and BPHYT_RS18365 are separated by 82 nucleotides BPHYT_RS18350: BPHYT_RS18350 - hypothetical protein, at 4,128,559 to 4,129,803 _RS18350 BPHYT_RS18355: BPHYT_RS18355 - membrane protein, at 4,129,978 to 4,130,802 _RS18355 BPHYT_RS18360: BPHYT_RS18360 - amino acid transporter, at 4,131,074 to 4,131,709 _RS18360 BPHYT_RS18365: BPHYT_RS18365 - oxidoreductase, at 4,131,792 to 4,132,661 _RS18365 Position (kb) 4129 4130 4131Strain fitness (log2 ratio) -2 -1 0 1 2at 4129.036 kb on + strand, within BPHYT_RS18350at 4129.039 kb on + strand, within BPHYT_RS18350at 4129.040 kb on - strandat 4129.096 kb on + strand, within BPHYT_RS18350at 4129.097 kb on - strandat 4129.097 kb on - strand, within BPHYT_RS18350at 4129.097 kb on - strand, within BPHYT_RS18350at 4129.342 kb on + strand, within BPHYT_RS18350at 4129.343 kb on - strand, within BPHYT_RS18350at 4129.343 kb on - strand, within BPHYT_RS18350at 4129.522 kb on + strand, within BPHYT_RS18350at 4129.522 kb on + strand, within BPHYT_RS18350at 4129.522 kb on + strand, within BPHYT_RS18350at 4129.523 kb on - strand, within BPHYT_RS18350at 4129.523 kb on - strand, within BPHYT_RS18350at 4129.549 kb on + strand, within BPHYT_RS18350at 4129.701 kb on + strandat 4129.701 kb on + strandat 4129.702 kb on - strandat 4129.758 kb on + strandat 4129.774 kb on + strandat 4129.801 kb on + strandat 4129.896 kb on + strandat 4129.897 kb on - strandat 4130.194 kb on - strand, within BPHYT_RS18355at 4130.227 kb on + strand, within BPHYT_RS18355at 4130.227 kb on + strand, within BPHYT_RS18355at 4130.287 kb on + strand, within BPHYT_RS18355at 4130.287 kb on + strand, within BPHYT_RS18355at 4130.288 kb on - strand, within BPHYT_RS18355at 4130.288 kb on - strand, within BPHYT_RS18355at 4130.416 kb on + strand, within BPHYT_RS18355at 4130.416 kb on + strand, within BPHYT_RS18355at 4130.416 kb on + strand, within BPHYT_RS18355at 4130.417 kb on - strand, within BPHYT_RS18355at 4130.417 kb on - strand, within BPHYT_RS18355at 4130.417 kb on - strand, within BPHYT_RS18355at 4130.417 kb on - strand, within BPHYT_RS18355at 4130.417 kb on - strand, within BPHYT_RS18355at 4130.470 kb on + strand, within BPHYT_RS18355at 4130.471 kb on - strand, within BPHYT_RS18355at 4130.471 kb on - strand, within BPHYT_RS18355at 4130.471 kb on - strandat 4130.471 kb on - strand, within BPHYT_RS18355at 4130.472 kb on + strand, within BPHYT_RS18355at 4130.472 kb on + strand, within BPHYT_RS18355at 4130.473 kb on - strand, within BPHYT_RS18355at 4130.473 kb on - strand, within BPHYT_RS18355at 4130.473 kb on - strand, within BPHYT_RS18355at 4130.473 kb on - strand, within BPHYT_RS18355at 4130.531 kb on + strand, within BPHYT_RS18355at 4130.531 kb on + strand, within BPHYT_RS18355at 4130.531 kb on + strand, within BPHYT_RS18355at 4130.532 kb on - strand, within BPHYT_RS18355at 4130.532 kb on - strand, within BPHYT_RS18355at 4130.532 kb on - strand, within BPHYT_RS18355at 4130.532 kb on - strand, within BPHYT_RS18355at 4130.632 kb on + strand, within BPHYT_RS18355at 4130.632 kb on + strand, within BPHYT_RS18355at 4130.633 kb on - strand, within BPHYT_RS18355at 4130.633 kb on - strand, within BPHYT_RS18355at 4130.633 kb on - strand, within BPHYT_RS18355at 4130.674 kb on + strand, within BPHYT_RS18355at 4130.674 kb on + strand, within BPHYT_RS18355at 4130.675 kb on - strand, within BPHYT_RS18355at 4130.675 kb on - strandat 4130.675 kb on - strand, within BPHYT_RS18355at 4130.675 kb on - strand, within BPHYT_RS18355at 4130.675 kb on - strand, within BPHYT_RS18355at 4130.817 kb on + strandat 4130.817 kb on + strandat 4130.818 kb on - strandat 4130.956 kb on + strandat 4130.956 kb on + strandat 4130.957 kb on - strandat 4130.957 kb on - strandat 4130.995 kb on + strandat 4130.996 kb on - strandat 4131.198 kb on + strand, within BPHYT_RS18360at 4131.199 kb on - strand, within BPHYT_RS18360at 4131.199 kb on - strand, within BPHYT_RS18360at 4131.199 kb on - strand, within BPHYT_RS18360at 4131.208 kb on - strand, within BPHYT_RS18360at 4131.208 kb on - strand, within BPHYT_RS18360at 4131.456 kb on + strand, within BPHYT_RS18360at 4131.456 kb on + strand, within BPHYT_RS18360at 4131.456 kb on + strand, within BPHYT_RS18360at 4131.457 kb on - strand, within BPHYT_RS18360at 4131.457 kb on - strand, within BPHYT_RS18360at 4131.457 kb on - strand, within BPHYT_RS18360at 4131.457 kb on - strand, within BPHYT_RS18360at 4131.465 kb on + strand, within BPHYT_RS18360at 4131.698 kb on - strandat 4131.741 kb on + strandat 4131.742 kb on - strandat 4131.744 kb on + strandat 4131.745 kb on - strandat 4131.745 kb on - strandat 4131.745 kb on - strandat 4131.745 kb on - strandat 4131.745 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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4,129,036 + BPHYT_RS18350 0.38 +1.3
4,129,039 + BPHYT_RS18350 0.39 -0.2
4,129,040 - +0.3
4,129,096 + BPHYT_RS18350 0.43 +1.8
4,129,097 - +1.3
4,129,097 - BPHYT_RS18350 0.43 +0.5
4,129,097 - BPHYT_RS18350 0.43 +0.5
4,129,342 + BPHYT_RS18350 0.63 +0.6
4,129,343 - BPHYT_RS18350 0.63 +1.3
4,129,343 - BPHYT_RS18350 0.63 +1.0
4,129,522 + BPHYT_RS18350 0.77 +0.7
4,129,522 + BPHYT_RS18350 0.77 +0.4
4,129,522 + BPHYT_RS18350 0.77 +0.6
4,129,523 - BPHYT_RS18350 0.77 +0.3
4,129,523 - BPHYT_RS18350 0.77 +0.5
4,129,549 + BPHYT_RS18350 0.80 +0.1
4,129,701 + +0.0
4,129,701 + +0.3
4,129,702 - +0.5
4,129,758 + +0.7
4,129,774 + +0.8
4,129,801 + +0.5
4,129,896 + +1.0
4,129,897 - -1.3
4,130,194 - BPHYT_RS18355 0.26 +0.6
4,130,227 + BPHYT_RS18355 0.30 +0.4
4,130,227 + BPHYT_RS18355 0.30 -0.1
4,130,287 + BPHYT_RS18355 0.37 +0.2
4,130,287 + BPHYT_RS18355 0.37 +1.1
4,130,288 - BPHYT_RS18355 0.38 +0.5
4,130,288 - BPHYT_RS18355 0.38 +1.1
4,130,416 + BPHYT_RS18355 0.53 +1.3
4,130,416 + BPHYT_RS18355 0.53 -0.4
4,130,416 + BPHYT_RS18355 0.53 +0.1
4,130,417 - BPHYT_RS18355 0.53 +1.4
4,130,417 - BPHYT_RS18355 0.53 +0.3
4,130,417 - BPHYT_RS18355 0.53 +0.4
4,130,417 - BPHYT_RS18355 0.53 +1.1
4,130,417 - BPHYT_RS18355 0.53 +0.5
4,130,470 + BPHYT_RS18355 0.60 +0.4
4,130,471 - BPHYT_RS18355 0.60 -0.0
4,130,471 - BPHYT_RS18355 0.60 +0.4
4,130,471 - -0.0
4,130,471 - BPHYT_RS18355 0.60 +1.3
4,130,472 + BPHYT_RS18355 0.60 -0.0
4,130,472 + BPHYT_RS18355 0.60 +1.7
4,130,473 - BPHYT_RS18355 0.60 +0.4
4,130,473 - BPHYT_RS18355 0.60 +0.6
4,130,473 - BPHYT_RS18355 0.60 -0.1
4,130,473 - BPHYT_RS18355 0.60 +0.0
4,130,531 + BPHYT_RS18355 0.67 +0.0
4,130,531 + BPHYT_RS18355 0.67 +1.0
4,130,531 + BPHYT_RS18355 0.67 +0.4
4,130,532 - BPHYT_RS18355 0.67 +0.5
4,130,532 - BPHYT_RS18355 0.67 +0.7
4,130,532 - BPHYT_RS18355 0.67 +0.4
4,130,532 - BPHYT_RS18355 0.67 +0.4
4,130,632 + BPHYT_RS18355 0.79 -2.5
4,130,632 + BPHYT_RS18355 0.79 -0.4
4,130,633 - BPHYT_RS18355 0.79 +0.6
4,130,633 - BPHYT_RS18355 0.79 +0.4
4,130,633 - BPHYT_RS18355 0.79 -0.3
4,130,674 + BPHYT_RS18355 0.84 +0.6
4,130,674 + BPHYT_RS18355 0.84 -0.0
4,130,675 - BPHYT_RS18355 0.84 -1.0
4,130,675 - -1.3
4,130,675 - BPHYT_RS18355 0.84 -0.2
4,130,675 - BPHYT_RS18355 0.84 +0.4
4,130,675 - BPHYT_RS18355 0.84 +0.0
4,130,817 + +0.5
4,130,817 + +0.0
4,130,818 - +1.0
4,130,956 + +0.5
4,130,956 + +1.3
4,130,957 - +0.0
4,130,957 - +0.3
4,130,995 + -0.9
4,130,996 - +0.9
4,131,198 + BPHYT_RS18360 0.19 +1.5
4,131,199 - BPHYT_RS18360 0.20 +0.7
4,131,199 - BPHYT_RS18360 0.20 +0.3
4,131,199 - BPHYT_RS18360 0.20 -0.2
4,131,208 - BPHYT_RS18360 0.21 +0.8
4,131,208 - BPHYT_RS18360 0.21 +0.0
4,131,456 + BPHYT_RS18360 0.60 +0.6
4,131,456 + BPHYT_RS18360 0.60 +1.4
4,131,456 + BPHYT_RS18360 0.60 +0.8
4,131,457 - BPHYT_RS18360 0.60 +0.8
4,131,457 - BPHYT_RS18360 0.60 +0.1
4,131,457 - BPHYT_RS18360 0.60 +0.6
4,131,457 - BPHYT_RS18360 0.60 +0.2
4,131,465 + BPHYT_RS18360 0.61 +1.0
4,131,698 - +0.6
4,131,741 + +0.4
4,131,742 - -1.0
4,131,744 + +0.1
4,131,745 - +0.3
4,131,745 - -2.2
4,131,745 - -0.9
4,131,745 - +0.3
4,131,745 - +1.2

Or see this region's nucleotide sequence