Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS13420 and BPHYT_RS13425 overlap by 4 nucleotides BPHYT_RS13425 and BPHYT_RS13430 are separated by 2 nucleotides BPHYT_RS13430 and BPHYT_RS13435 overlap by 8 nucleotides
BPHYT_RS13420: BPHYT_RS13420 - hypothetical protein, at 3,064,742 to 3,065,725
_RS13420
BPHYT_RS13425: BPHYT_RS13425 - histone acetyltransferase, at 3,065,722 to 3,066,333
_RS13425
BPHYT_RS13430: BPHYT_RS13430 - radical SAM protein, at 3,066,336 to 3,067,406
_RS13430
BPHYT_RS13435: BPHYT_RS13435 - aliphatic nitrilase, at 3,067,399 to 3,068,433
_RS13435
Position (kb) 3066
3067
3068 Strain fitness (log2 ratio) -1
0
1
2 at 3065.451 kb on + strand, within BPHYT_RS13420 at 3065.455 kb on + strand, within BPHYT_RS13420 at 3066.151 kb on - strand, within BPHYT_RS13425 at 3066.347 kb on - strand at 3066.607 kb on + strand, within BPHYT_RS13430 at 3066.665 kb on - strand, within BPHYT_RS13430 at 3067.935 kb on - strand, within BPHYT_RS13435
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 3,065,451 + BPHYT_RS13420 0.72 -1.3 3,065,455 + BPHYT_RS13420 0.72 +1.9 3,066,151 - BPHYT_RS13425 0.70 -0.3 3,066,347 - -0.1 3,066,607 + BPHYT_RS13430 0.25 -0.8 3,066,665 - BPHYT_RS13430 0.31 -1.1 3,067,935 - BPHYT_RS13435 0.52 +0.4
Or see this region's nucleotide sequence