Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10100

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10095 and BPHYT_RS10100 are separated by 103 nucleotidesBPHYT_RS10100 and BPHYT_RS10105 are separated by 283 nucleotides BPHYT_RS10095: BPHYT_RS10095 - integrase, at 2,298,727 to 2,299,932 _RS10095 BPHYT_RS10100: BPHYT_RS10100 - dihydroxy-acid dehydratase, at 2,300,036 to 2,301,898 _RS10100 BPHYT_RS10105: BPHYT_RS10105 - hypothetical protein, at 2,302,182 to 2,303,105 _RS10105 Position (kb) 2300 2301 2302Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2299.327 kb on + strand, within BPHYT_RS10095at 2299.844 kb on - strandat 2300.103 kb on + strandat 2300.922 kb on - strand, within BPHYT_RS10100at 2301.050 kb on - strand, within BPHYT_RS10100at 2301.154 kb on - strand, within BPHYT_RS10100at 2301.583 kb on - strand, within BPHYT_RS10100at 2301.583 kb on - strand, within BPHYT_RS10100at 2301.583 kb on - strand, within BPHYT_RS10100at 2301.624 kb on + strand, within BPHYT_RS10100at 2301.912 kb on + strandat 2302.048 kb on - strandat 2302.053 kb on + strandat 2302.195 kb on + strandat 2302.614 kb on - strand, within BPHYT_RS10105at 2302.683 kb on + strand, within BPHYT_RS10105at 2302.684 kb on - strand, within BPHYT_RS10105at 2302.684 kb on - strand, within BPHYT_RS10105at 2302.687 kb on + strand, within BPHYT_RS10105at 2302.688 kb on - strand, within BPHYT_RS10105at 2302.780 kb on + strand, within BPHYT_RS10105at 2302.781 kb on - strand, within BPHYT_RS10105

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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2,299,327 + BPHYT_RS10095 0.50 -0.6
2,299,844 - +0.9
2,300,103 + -4.0
2,300,922 - BPHYT_RS10100 0.48 -1.7
2,301,050 - BPHYT_RS10100 0.54 +1.5
2,301,154 - BPHYT_RS10100 0.60 -0.5
2,301,583 - BPHYT_RS10100 0.83 -1.6
2,301,583 - BPHYT_RS10100 0.83 -0.6
2,301,583 - BPHYT_RS10100 0.83 -1.5
2,301,624 + BPHYT_RS10100 0.85 -2.6
2,301,912 + -2.9
2,302,048 - +0.1
2,302,053 + -1.4
2,302,195 + -0.4
2,302,614 - BPHYT_RS10105 0.47 +0.1
2,302,683 + BPHYT_RS10105 0.54 +1.0
2,302,684 - BPHYT_RS10105 0.54 +0.1
2,302,684 - BPHYT_RS10105 0.54 -1.2
2,302,687 + BPHYT_RS10105 0.55 -0.1
2,302,688 - BPHYT_RS10105 0.55 +1.6
2,302,780 + BPHYT_RS10105 0.65 +1.6
2,302,781 - BPHYT_RS10105 0.65 -0.1

Or see this region's nucleotide sequence