Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06955 and BPHYT_RS06960 are separated by 16 nucleotides BPHYT_RS06960 and BPHYT_RS06965 are separated by 26 nucleotides BPHYT_RS06965 and BPHYT_RS06970 are separated by 266 nucleotides BPHYT_RS06970 and BPHYT_RS06975 are separated by 215 nucleotides
BPHYT_RS06955: BPHYT_RS06955 - biopolymer transporter ExbD, at 1,573,985 to 1,574,404
_RS06955
BPHYT_RS06960: BPHYT_RS06960 - MotA/TolQ/ExbB proton channel, at 1,574,421 to 1,575,152
_RS06960
BPHYT_RS06965: BPHYT_RS06965 - cell envelope biogenesis protein TonB, at 1,575,179 to 1,575,913
_RS06965
BPHYT_RS06970: BPHYT_RS06970 - (2Fe-2S)-binding protein, at 1,576,180 to 1,576,416
_RS06970
BPHYT_RS06975: BPHYT_RS06975 - glutamate racemase, at 1,576,632 to 1,577,519
_RS06975
Position (kb) 1575
1576 Strain fitness (log2 ratio) -1
0
1 at 1576.182 kb on - strand at 1576.429 kb on - strand at 1576.429 kb on - strand at 1576.515 kb on + strand at 1576.515 kb on + strand at 1576.516 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,576,182 - -0.3 1,576,429 - -0.0 1,576,429 - -1.4 1,576,515 + +0.3 1,576,515 + -0.6 1,576,516 - -0.5
Or see this region's nucleotide sequence