Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03700 and BPHYT_RS03705 overlap by 4 nucleotides BPHYT_RS03705 and BPHYT_RS03710 are separated by 10 nucleotides BPHYT_RS03710 and BPHYT_RS03715 are separated by 155 nucleotides BPHYT_RS03715 and BPHYT_RS03720 are separated by 70 nucleotides
BPHYT_RS03700: BPHYT_RS03700 - cell envelope biogenesis protein TonB, at 841,135 to 842,169
_RS03700
BPHYT_RS03705: BPHYT_RS03705 - biopolymer transporter ExbD, at 842,166 to 842,612
_RS03705
BPHYT_RS03710: BPHYT_RS03710 - protein tolQ, at 842,623 to 843,300
_RS03710
BPHYT_RS03715: BPHYT_RS03715 - 4-hydroxybenzoyl-CoA thioesterase, at 843,456 to 843,935
_RS03715
BPHYT_RS03720: BPHYT_RS03720 - malonic semialdehyde reductase, at 844,006 to 844,752
_RS03720
Position (kb) 842
843
844 Strain fitness (log2 ratio) -1
0
1
2 at 842.148 kb on - strand at 843.426 kb on - strand at 843.675 kb on + strand, within BPHYT_RS03715 at 843.675 kb on + strand, within BPHYT_RS03715 at 843.675 kb on + strand, within BPHYT_RS03715 at 843.676 kb on - strand, within BPHYT_RS03715 at 843.676 kb on - strand, within BPHYT_RS03715 at 843.676 kb on - strand, within BPHYT_RS03715 at 843.676 kb on - strand, within BPHYT_RS03715 at 843.829 kb on + strand, within BPHYT_RS03715 at 843.862 kb on + strand, within BPHYT_RS03715 at 843.865 kb on + strand, within BPHYT_RS03715 at 843.865 kb on + strand, within BPHYT_RS03715 at 843.866 kb on - strand, within BPHYT_RS03715 at 843.887 kb on - strand, within BPHYT_RS03715 at 843.920 kb on + strand at 843.921 kb on - strand at 843.921 kb on - strand at 843.921 kb on - strand at 844.103 kb on + strand, within BPHYT_RS03720 at 844.103 kb on + strand, within BPHYT_RS03720 at 844.104 kb on - strand, within BPHYT_RS03720 at 844.104 kb on - strand, within BPHYT_RS03720
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 842,148 - -0.7 843,426 - +0.3 843,675 + BPHYT_RS03715 0.46 -0.2 843,675 + BPHYT_RS03715 0.46 +0.1 843,675 + BPHYT_RS03715 0.46 -0.2 843,676 - BPHYT_RS03715 0.46 +0.0 843,676 - BPHYT_RS03715 0.46 +0.5 843,676 - BPHYT_RS03715 0.46 +0.7 843,676 - BPHYT_RS03715 0.46 +1.8 843,829 + BPHYT_RS03715 0.78 -1.5 843,862 + BPHYT_RS03715 0.85 +0.2 843,865 + BPHYT_RS03715 0.85 -0.7 843,865 + BPHYT_RS03715 0.85 +0.8 843,866 - BPHYT_RS03715 0.85 -0.4 843,887 - BPHYT_RS03715 0.90 -0.2 843,920 + +0.8 843,921 - +0.4 843,921 - -0.0 843,921 - -0.1 844,103 + BPHYT_RS03720 0.13 -1.3 844,103 + BPHYT_RS03720 0.13 -0.7 844,104 - BPHYT_RS03720 0.13 -0.8 844,104 - BPHYT_RS03720 0.13 +1.5
Or see this region's nucleotide sequence