Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02750 and BPHYT_RS02755 are separated by 92 nucleotides BPHYT_RS02755 and BPHYT_RS02760 are separated by 28 nucleotides
BPHYT_RS02750: BPHYT_RS02750 - hypothetical protein, at 618,326 to 619,651
_RS02750
BPHYT_RS02755: BPHYT_RS02755 - cyd operon protein YbgT, at 619,744 to 619,857
_RS02755
BPHYT_RS02760: BPHYT_RS02760 - cytochrome BD oxidase subunit II, at 619,886 to 621,022
_RS02760
Position (kb) 619
620 Strain fitness (log2 ratio) -2
-1
0
1
2 at 618.744 kb on - strand, within BPHYT_RS02750 at 618.766 kb on + strand, within BPHYT_RS02750 at 618.818 kb on + strand, within BPHYT_RS02750 at 618.885 kb on + strand, within BPHYT_RS02750 at 618.904 kb on + strand, within BPHYT_RS02750 at 618.983 kb on + strand, within BPHYT_RS02750 at 618.983 kb on + strand, within BPHYT_RS02750 at 619.079 kb on + strand, within BPHYT_RS02750 at 619.079 kb on + strand, within BPHYT_RS02750 at 619.100 kb on - strand, within BPHYT_RS02750 at 619.131 kb on - strand, within BPHYT_RS02750 at 619.177 kb on + strand, within BPHYT_RS02750 at 619.178 kb on - strand at 619.180 kb on + strand, within BPHYT_RS02750 at 619.191 kb on - strand, within BPHYT_RS02750 at 619.322 kb on + strand, within BPHYT_RS02750 at 619.322 kb on + strand, within BPHYT_RS02750 at 619.328 kb on + strand, within BPHYT_RS02750 at 619.329 kb on - strand, within BPHYT_RS02750 at 619.329 kb on - strand, within BPHYT_RS02750 at 619.329 kb on - strand, within BPHYT_RS02750 at 619.397 kb on + strand, within BPHYT_RS02750 at 619.481 kb on + strand, within BPHYT_RS02750 at 619.482 kb on - strand, within BPHYT_RS02750 at 619.482 kb on - strand, within BPHYT_RS02750 at 619.526 kb on + strand at 619.649 kb on + strand at 619.650 kb on - strand at 619.803 kb on + strand, within BPHYT_RS02755 at 619.891 kb on - strand at 619.897 kb on + strand at 619.897 kb on + strand at 619.898 kb on - strand at 619.951 kb on - strand at 620.557 kb on - strand, within BPHYT_RS02760 at 620.677 kb on + strand, within BPHYT_RS02760
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 618,744 - BPHYT_RS02750 0.32 -0.9 618,766 + BPHYT_RS02750 0.33 -0.3 618,818 + BPHYT_RS02750 0.37 -0.9 618,885 + BPHYT_RS02750 0.42 -0.4 618,904 + BPHYT_RS02750 0.44 -0.3 618,983 + BPHYT_RS02750 0.50 -0.4 618,983 + BPHYT_RS02750 0.50 -0.3 619,079 + BPHYT_RS02750 0.57 -1.2 619,079 + BPHYT_RS02750 0.57 -0.7 619,100 - BPHYT_RS02750 0.58 -0.3 619,131 - BPHYT_RS02750 0.61 -0.3 619,177 + BPHYT_RS02750 0.64 +0.5 619,178 - +1.3 619,180 + BPHYT_RS02750 0.64 -0.2 619,191 - BPHYT_RS02750 0.65 +0.1 619,322 + BPHYT_RS02750 0.75 -1.5 619,322 + BPHYT_RS02750 0.75 +2.3 619,328 + BPHYT_RS02750 0.76 +1.7 619,329 - BPHYT_RS02750 0.76 -0.6 619,329 - BPHYT_RS02750 0.76 -1.8 619,329 - BPHYT_RS02750 0.76 -0.1 619,397 + BPHYT_RS02750 0.81 -0.6 619,481 + BPHYT_RS02750 0.87 -0.5 619,482 - BPHYT_RS02750 0.87 -0.5 619,482 - BPHYT_RS02750 0.87 -1.1 619,526 + +0.4 619,649 + +1.3 619,650 - -0.1 619,803 + BPHYT_RS02755 0.52 -1.5 619,891 - -0.2 619,897 + -0.3 619,897 + +0.3 619,898 - -0.3 619,951 - -0.4 620,557 - BPHYT_RS02760 0.59 -0.7 620,677 + BPHYT_RS02760 0.70 -2.3
Or see this region's nucleotide sequence