Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02460

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02455 and BPHYT_RS02460 are separated by 41 nucleotidesBPHYT_RS02460 and BPHYT_RS02465 overlap by 4 nucleotidesBPHYT_RS02465 and BPHYT_RS02470 are separated by 27 nucleotides BPHYT_RS02455: BPHYT_RS02455 - taurine ABC transporter substrate-binding protein, at 557,015 to 557,998 _RS02455 BPHYT_RS02460: BPHYT_RS02460 - nitrate ABC transporter ATP-binding protein, at 558,040 to 558,837 _RS02460 BPHYT_RS02465: BPHYT_RS02465 - taurine ABC transporter permease, at 558,834 to 559,703 _RS02465 BPHYT_RS02470: BPHYT_RS02470 - phosphoserine phosphatase, at 559,731 to 560,414 _RS02470 Position (kb) 558 559Strain fitness (log2 ratio) -1 0 1 2 3at 557.147 kb on + strand, within BPHYT_RS02455at 557.273 kb on - strand, within BPHYT_RS02455at 557.343 kb on + strand, within BPHYT_RS02455at 557.522 kb on + strand, within BPHYT_RS02455at 557.522 kb on + strand, within BPHYT_RS02455at 557.522 kb on + strand, within BPHYT_RS02455at 557.522 kb on + strand, within BPHYT_RS02455at 557.524 kb on + strand, within BPHYT_RS02455at 557.524 kb on + strand, within BPHYT_RS02455at 557.575 kb on + strand, within BPHYT_RS02455at 557.576 kb on - strand, within BPHYT_RS02455at 557.813 kb on + strand, within BPHYT_RS02455at 558.129 kb on - strand, within BPHYT_RS02460at 558.133 kb on - strand, within BPHYT_RS02460at 558.242 kb on + strand, within BPHYT_RS02460at 558.442 kb on + strand, within BPHYT_RS02460at 558.442 kb on + strand, within BPHYT_RS02460at 558.442 kb on + strand, within BPHYT_RS02460at 558.515 kb on + strand, within BPHYT_RS02460at 558.696 kb on + strand, within BPHYT_RS02460at 558.700 kb on + strand, within BPHYT_RS02460at 558.700 kb on + strand, within BPHYT_RS02460at 558.700 kb on + strand, within BPHYT_RS02460at 558.701 kb on - strand, within BPHYT_RS02460at 558.701 kb on - strand, within BPHYT_RS02460at 558.701 kb on - strand, within BPHYT_RS02460at 559.028 kb on - strand, within BPHYT_RS02465at 559.243 kb on - strand, within BPHYT_RS02465at 559.326 kb on + strand, within BPHYT_RS02465at 559.326 kb on + strand, within BPHYT_RS02465at 559.326 kb on + strand, within BPHYT_RS02465at 559.327 kb on - strand, within BPHYT_RS02465at 559.327 kb on - strand, within BPHYT_RS02465at 559.407 kb on + strand, within BPHYT_RS02465at 559.408 kb on - strand, within BPHYT_RS02465at 559.702 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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557,147 + BPHYT_RS02455 0.13 +0.0
557,273 - BPHYT_RS02455 0.26 -1.2
557,343 + BPHYT_RS02455 0.33 -0.4
557,522 + BPHYT_RS02455 0.52 +0.4
557,522 + BPHYT_RS02455 0.52 +0.8
557,522 + BPHYT_RS02455 0.52 -0.8
557,522 + BPHYT_RS02455 0.52 +0.2
557,524 + BPHYT_RS02455 0.52 +3.2
557,524 + BPHYT_RS02455 0.52 +0.7
557,575 + BPHYT_RS02455 0.57 -1.2
557,576 - BPHYT_RS02455 0.57 +0.7
557,813 + BPHYT_RS02455 0.81 +0.4
558,129 - BPHYT_RS02460 0.11 -0.6
558,133 - BPHYT_RS02460 0.12 +0.2
558,242 + BPHYT_RS02460 0.25 +0.3
558,442 + BPHYT_RS02460 0.50 +0.2
558,442 + BPHYT_RS02460 0.50 -0.1
558,442 + BPHYT_RS02460 0.50 +0.2
558,515 + BPHYT_RS02460 0.60 +0.8
558,696 + BPHYT_RS02460 0.82 +0.9
558,700 + BPHYT_RS02460 0.83 -0.1
558,700 + BPHYT_RS02460 0.83 +0.2
558,700 + BPHYT_RS02460 0.83 +0.2
558,701 - BPHYT_RS02460 0.83 -0.5
558,701 - BPHYT_RS02460 0.83 +1.0
558,701 - BPHYT_RS02460 0.83 +0.1
559,028 - BPHYT_RS02465 0.22 -1.0
559,243 - BPHYT_RS02465 0.47 -0.8
559,326 + BPHYT_RS02465 0.57 +0.2
559,326 + BPHYT_RS02465 0.57 +0.2
559,326 + BPHYT_RS02465 0.57 -0.3
559,327 - BPHYT_RS02465 0.57 +0.4
559,327 - BPHYT_RS02465 0.57 -0.4
559,407 + BPHYT_RS02465 0.66 -0.4
559,408 - BPHYT_RS02465 0.66 +1.0
559,702 - -0.4

Or see this region's nucleotide sequence