Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00575 and BPHYT_RS00580 are separated by 916 nucleotides BPHYT_RS00580 and BPHYT_RS00585 are separated by 568 nucleotides
BPHYT_RS00575: BPHYT_RS00575 - hypothetical protein, at 139,911 to 140,261
_RS00575
BPHYT_RS00580: BPHYT_RS00580 - hypothetical protein, at 141,178 to 141,618
_RS00580
BPHYT_RS00585: BPHYT_RS00585 - hypothetical protein, at 142,187 to 142,408
_RS00585
Position (kb) 141
142 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 140.426 kb on + strand at 140.514 kb on - strand at 140.601 kb on + strand at 140.602 kb on - strand at 140.749 kb on - strand at 140.749 kb on - strand at 140.824 kb on + strand at 140.824 kb on + strand at 140.825 kb on - strand at 141.057 kb on + strand at 141.058 kb on - strand at 141.076 kb on + strand at 141.105 kb on - strand at 141.105 kb on - strand at 141.180 kb on - strand at 141.227 kb on + strand, within BPHYT_RS00580 at 141.304 kb on + strand, within BPHYT_RS00580 at 141.304 kb on + strand, within BPHYT_RS00580 at 141.305 kb on - strand, within BPHYT_RS00580 at 141.350 kb on + strand, within BPHYT_RS00580 at 141.362 kb on + strand, within BPHYT_RS00580 at 141.362 kb on + strand, within BPHYT_RS00580 at 141.517 kb on - strand, within BPHYT_RS00580 at 141.651 kb on + strand at 141.723 kb on - strand at 141.937 kb on + strand at 141.948 kb on + strand at 142.089 kb on - strand at 142.134 kb on + strand at 142.135 kb on - strand at 142.136 kb on + strand at 142.137 kb on - strand at 142.137 kb on - strand at 142.137 kb on - strand at 142.189 kb on - strand at 142.248 kb on - strand, within BPHYT_RS00585 at 142.357 kb on - strand, within BPHYT_RS00585 at 142.390 kb on - strand at 142.390 kb on - strand at 142.424 kb on - strand at 142.443 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 140,426 + -0.4 140,514 - -0.5 140,601 + -0.2 140,602 - -0.7 140,749 - -0.8 140,749 - +3.2 140,824 + +0.3 140,824 + +0.1 140,825 - +1.3 141,057 + -1.6 141,058 - -1.4 141,076 + -0.8 141,105 - -1.1 141,105 - -1.0 141,180 - -1.3 141,227 + BPHYT_RS00580 0.11 -0.2 141,304 + BPHYT_RS00580 0.29 -0.9 141,304 + BPHYT_RS00580 0.29 -0.4 141,305 - BPHYT_RS00580 0.29 -0.5 141,350 + BPHYT_RS00580 0.39 -0.8 141,362 + BPHYT_RS00580 0.42 +0.3 141,362 + BPHYT_RS00580 0.42 -2.7 141,517 - BPHYT_RS00580 0.77 -1.2 141,651 + -0.4 141,723 - -0.1 141,937 + -0.6 141,948 + -0.9 142,089 - +0.1 142,134 + -1.2 142,135 - -1.6 142,136 + -0.6 142,137 - -0.6 142,137 - -0.8 142,137 - +0.1 142,189 - -0.9 142,248 - BPHYT_RS00585 0.27 -1.0 142,357 - BPHYT_RS00585 0.77 +1.2 142,390 - -0.8 142,390 - -1.5 142,424 - -1.2 142,443 - +0.6
Or see this region's nucleotide sequence