Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00195

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00190 and BPHYT_RS00195 are separated by 226 nucleotidesBPHYT_RS00195 and BPHYT_RS00200 are separated by 800 nucleotides BPHYT_RS00190: BPHYT_RS00190 - membrane protein, at 50,143 to 51,210 _RS00190 BPHYT_RS00195: BPHYT_RS00195 - LysR family transcriptional regulator, at 51,437 to 52,348 _RS00195 BPHYT_RS00200: BPHYT_RS00200 - amidase, at 53,149 to 54,552 _RS00200 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1 2at 50.475 kb on - strand, within BPHYT_RS00190at 50.483 kb on + strand, within BPHYT_RS00190at 50.484 kb on - strand, within BPHYT_RS00190at 50.543 kb on + strand, within BPHYT_RS00190at 50.666 kb on + strand, within BPHYT_RS00190at 50.667 kb on - strand, within BPHYT_RS00190at 50.788 kb on - strand, within BPHYT_RS00190at 50.825 kb on + strand, within BPHYT_RS00190at 50.826 kb on - strand, within BPHYT_RS00190at 50.826 kb on - strand, within BPHYT_RS00190at 50.826 kb on - strandat 50.826 kb on - strand, within BPHYT_RS00190at 50.826 kb on - strand, within BPHYT_RS00190at 50.931 kb on - strand, within BPHYT_RS00190at 50.931 kb on - strand, within BPHYT_RS00190at 51.051 kb on - strand, within BPHYT_RS00190at 51.123 kb on + strandat 51.123 kb on + strandat 51.124 kb on - strandat 51.172 kb on - strandat 51.318 kb on - strandat 51.318 kb on - strandat 51.338 kb on + strandat 51.339 kb on - strandat 51.339 kb on - strandat 51.413 kb on + strandat 51.827 kb on + strand, within BPHYT_RS00195at 51.956 kb on + strand, within BPHYT_RS00195at 51.957 kb on - strand, within BPHYT_RS00195at 52.046 kb on + strand, within BPHYT_RS00195at 52.046 kb on + strand, within BPHYT_RS00195at 52.046 kb on + strand, within BPHYT_RS00195at 52.250 kb on + strand, within BPHYT_RS00195at 52.253 kb on + strand, within BPHYT_RS00195at 52.253 kb on + strand, within BPHYT_RS00195at 52.254 kb on - strand, within BPHYT_RS00195at 52.254 kb on - strand, within BPHYT_RS00195at 52.254 kb on - strand, within BPHYT_RS00195at 52.501 kb on - strandat 52.597 kb on - strandat 52.616 kb on - strandat 52.729 kb on + strandat 52.729 kb on + strandat 52.759 kb on + strandat 52.759 kb on + strandat 52.983 kb on - strandat 52.993 kb on + strandat 52.993 kb on + strandat 53.276 kb on - strandat 53.322 kb on + strand, within BPHYT_RS00200at 53.323 kb on - strand, within BPHYT_RS00200

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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50,475 - BPHYT_RS00190 0.31 -0.8
50,483 + BPHYT_RS00190 0.32 +0.1
50,484 - BPHYT_RS00190 0.32 +0.1
50,543 + BPHYT_RS00190 0.37 -0.8
50,666 + BPHYT_RS00190 0.49 -0.8
50,667 - BPHYT_RS00190 0.49 -0.9
50,788 - BPHYT_RS00190 0.60 -1.6
50,825 + BPHYT_RS00190 0.64 +1.9
50,826 - BPHYT_RS00190 0.64 +0.4
50,826 - BPHYT_RS00190 0.64 -0.2
50,826 - -1.6
50,826 - BPHYT_RS00190 0.64 +0.8
50,826 - BPHYT_RS00190 0.64 -0.6
50,931 - BPHYT_RS00190 0.74 +0.4
50,931 - BPHYT_RS00190 0.74 -0.0
51,051 - BPHYT_RS00190 0.85 -0.1
51,123 + +1.7
51,123 + +1.0
51,124 - -0.5
51,172 - +1.2
51,318 - -0.4
51,318 - -0.6
51,338 + +0.4
51,339 - -0.4
51,339 - -0.7
51,413 + -0.5
51,827 + BPHYT_RS00195 0.43 -0.2
51,956 + BPHYT_RS00195 0.57 +0.1
51,957 - BPHYT_RS00195 0.57 +0.2
52,046 + BPHYT_RS00195 0.67 -0.2
52,046 + BPHYT_RS00195 0.67 -1.8
52,046 + BPHYT_RS00195 0.67 +0.2
52,250 + BPHYT_RS00195 0.89 -1.0
52,253 + BPHYT_RS00195 0.89 -0.3
52,253 + BPHYT_RS00195 0.89 +0.4
52,254 - BPHYT_RS00195 0.90 -0.7
52,254 - BPHYT_RS00195 0.90 +0.3
52,254 - BPHYT_RS00195 0.90 -0.4
52,501 - -0.4
52,597 - +1.2
52,616 - -0.9
52,729 + +0.4
52,729 + -0.2
52,759 + +0.1
52,759 + +0.3
52,983 - +1.9
52,993 + +0.0
52,993 + -0.4
53,276 - -0.1
53,322 + BPHYT_RS00200 0.12 -0.1
53,323 - BPHYT_RS00200 0.12 -0.3

Or see this region's nucleotide sequence