Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00060 and BPHYT_RS00065 overlap by 4 nucleotides BPHYT_RS00065 and BPHYT_RS00070 are separated by 251 nucleotides BPHYT_RS00070 and BPHYT_RS00075 overlap by 4 nucleotides
BPHYT_RS00060: BPHYT_RS00060 - hypothetical protein, at 16,121 to 18,958
_RS00060
BPHYT_RS00065: BPHYT_RS00065 - hypothetical protein, at 18,955 to 19,692
_RS00065
BPHYT_RS00070: BPHYT_RS00070 - hypothetical protein, at 19,944 to 21,122
_RS00070
BPHYT_RS00075: BPHYT_RS00075 - hypothetical protein, at 21,119 to 24,493
_RS00075
Position (kb) 19
20
21
22 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 19.731 kb on - strand at 19.731 kb on - strand at 20.044 kb on + strand at 20.097 kb on - strand, within BPHYT_RS00070 at 20.355 kb on - strand, within BPHYT_RS00070 at 20.475 kb on - strand, within BPHYT_RS00070 at 20.478 kb on + strand, within BPHYT_RS00070 at 20.478 kb on + strand, within BPHYT_RS00070 at 20.478 kb on + strand, within BPHYT_RS00070 at 20.478 kb on + strand, within BPHYT_RS00070 at 20.594 kb on - strand, within BPHYT_RS00070 at 20.640 kb on + strand, within BPHYT_RS00070 at 20.640 kb on + strand, within BPHYT_RS00070 at 20.640 kb on + strand, within BPHYT_RS00070 at 20.641 kb on - strand, within BPHYT_RS00070 at 20.641 kb on - strand, within BPHYT_RS00070 at 20.642 kb on + strand, within BPHYT_RS00070 at 20.643 kb on - strand, within BPHYT_RS00070 at 20.643 kb on - strand, within BPHYT_RS00070 at 20.644 kb on + strand, within BPHYT_RS00070 at 20.644 kb on + strand, within BPHYT_RS00070 at 20.645 kb on - strand, within BPHYT_RS00070 at 20.645 kb on - strand, within BPHYT_RS00070 at 20.682 kb on + strand, within BPHYT_RS00070 at 20.682 kb on + strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.876 kb on + strand, within BPHYT_RS00070 at 20.876 kb on + strand, within BPHYT_RS00070 at 21.041 kb on + strand at 21.042 kb on - strand at 21.222 kb on - strand at 21.240 kb on + strand at 21.240 kb on + strand at 21.241 kb on - strand at 21.241 kb on - strand at 21.378 kb on - strand at 21.430 kb on + strand at 21.430 kb on + strand at 21.430 kb on + strand at 21.431 kb on - strand at 21.431 kb on - strand at 21.431 kb on - strand at 21.433 kb on - strand at 21.480 kb on + strand, within BPHYT_RS00075 at 21.758 kb on - strand, within BPHYT_RS00075 at 21.759 kb on + strand, within BPHYT_RS00075 at 21.760 kb on - strand, within BPHYT_RS00075 at 21.774 kb on + strand, within BPHYT_RS00075 at 21.822 kb on - strand, within BPHYT_RS00075 at 21.898 kb on + strand, within BPHYT_RS00075
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 19,731 - +1.2 19,731 - -0.4 20,044 + -1.2 20,097 - BPHYT_RS00070 0.13 -0.2 20,355 - BPHYT_RS00070 0.35 +3.0 20,475 - BPHYT_RS00070 0.45 -0.5 20,478 + BPHYT_RS00070 0.45 -0.4 20,478 + BPHYT_RS00070 0.45 -1.0 20,478 + BPHYT_RS00070 0.45 -1.1 20,478 + BPHYT_RS00070 0.45 -0.8 20,594 - BPHYT_RS00070 0.55 -0.7 20,640 + BPHYT_RS00070 0.59 -0.6 20,640 + BPHYT_RS00070 0.59 -1.0 20,640 + BPHYT_RS00070 0.59 -0.4 20,641 - BPHYT_RS00070 0.59 +0.0 20,641 - BPHYT_RS00070 0.59 -1.6 20,642 + BPHYT_RS00070 0.59 -0.6 20,643 - BPHYT_RS00070 0.59 -1.4 20,643 - BPHYT_RS00070 0.59 +0.2 20,644 + BPHYT_RS00070 0.59 -1.0 20,644 + BPHYT_RS00070 0.59 -0.8 20,645 - BPHYT_RS00070 0.59 -0.4 20,645 - BPHYT_RS00070 0.59 -1.5 20,682 + BPHYT_RS00070 0.63 -1.0 20,682 + BPHYT_RS00070 0.63 -0.9 20,683 - BPHYT_RS00070 0.63 +0.1 20,683 - BPHYT_RS00070 0.63 -1.0 20,683 - BPHYT_RS00070 0.63 -1.5 20,683 - BPHYT_RS00070 0.63 -0.4 20,683 - BPHYT_RS00070 0.63 -0.4 20,683 - BPHYT_RS00070 0.63 -0.4 20,683 - BPHYT_RS00070 0.63 -0.1 20,876 + BPHYT_RS00070 0.79 -0.5 20,876 + BPHYT_RS00070 0.79 -0.9 21,041 + -0.7 21,042 - -0.4 21,222 - +0.7 21,240 + -0.3 21,240 + -0.5 21,241 - +0.3 21,241 - +0.0 21,378 - -0.4 21,430 + -1.2 21,430 + +0.2 21,430 + -0.8 21,431 - -0.5 21,431 - +0.3 21,431 - -0.3 21,433 - -0.4 21,480 + BPHYT_RS00075 0.11 +0.8 21,758 - BPHYT_RS00075 0.19 -0.2 21,759 + BPHYT_RS00075 0.19 -1.8 21,760 - BPHYT_RS00075 0.19 -1.2 21,774 + BPHYT_RS00075 0.19 +0.2 21,822 - BPHYT_RS00075 0.21 -0.9 21,898 + BPHYT_RS00075 0.23 -0.8
Or see this region's nucleotide sequence