Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30610

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30605 and BPHYT_RS30610 are separated by 105 nucleotidesBPHYT_RS30610 and BPHYT_RS30615 are separated by 142 nucleotides BPHYT_RS30605: BPHYT_RS30605 - MlrC domain-containing protein, at 2,423,233 to 2,424,750 _RS30605 BPHYT_RS30610: BPHYT_RS30610 - major facilitator transporter, at 2,424,856 to 2,426,145 _RS30610 BPHYT_RS30615: BPHYT_RS30615 - LysR family transcriptional regulator, at 2,426,288 to 2,427,250 _RS30615 Position (kb) 2424 2425 2426 2427Strain fitness (log2 ratio) -2 -1 0 1 2at 2424.104 kb on + strand, within BPHYT_RS30605at 2424.105 kb on - strand, within BPHYT_RS30605at 2424.105 kb on - strand, within BPHYT_RS30605at 2425.212 kb on - strand, within BPHYT_RS30610at 2425.365 kb on - strand, within BPHYT_RS30610at 2425.742 kb on + strand, within BPHYT_RS30610at 2425.742 kb on + strand, within BPHYT_RS30610at 2426.231 kb on + strandat 2426.374 kb on + strandat 2426.375 kb on - strandat 2426.888 kb on - strand, within BPHYT_RS30615

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,424,104 + BPHYT_RS30605 0.57 +0.1
2,424,105 - BPHYT_RS30605 0.57 +0.7
2,424,105 - BPHYT_RS30605 0.57 -0.2
2,425,212 - BPHYT_RS30610 0.28 -0.1
2,425,365 - BPHYT_RS30610 0.39 +0.9
2,425,742 + BPHYT_RS30610 0.69 -1.8
2,425,742 + BPHYT_RS30610 0.69 -1.5
2,426,231 + +0.3
2,426,374 + +2.3
2,426,375 - -0.7
2,426,888 - BPHYT_RS30615 0.62 +2.5

Or see this region's nucleotide sequence