Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30365

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30355 and BPHYT_RS30360 are separated by 182 nucleotidesBPHYT_RS30360 and BPHYT_RS30365 are separated by 48 nucleotidesBPHYT_RS30365 and BPHYT_RS30370 are separated by 56 nucleotides BPHYT_RS30355: BPHYT_RS30355 - transcriptional regulator, at 2,364,113 to 2,367,013 _RS30355 BPHYT_RS30360: BPHYT_RS30360 - hypothetical protein, at 2,367,196 to 2,367,711 _RS30360 BPHYT_RS30365: BPHYT_RS30365 - beta-lactamase, at 2,367,760 to 2,368,779 _RS30365 BPHYT_RS30370: BPHYT_RS30370 - thioredoxin reductase, at 2,368,836 to 2,370,563 _RS30370 Position (kb) 2367 2368 2369Strain fitness (log2 ratio) -1 0 1at 2366.812 kb on + strandat 2366.812 kb on + strandat 2366.812 kb on + strandat 2366.813 kb on - strandat 2366.813 kb on - strandat 2368.053 kb on + strand, within BPHYT_RS30365at 2368.828 kb on - strandat 2369.776 kb on + strand, within BPHYT_RS30370

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,366,812 + +0.0
2,366,812 + -0.1
2,366,812 + -0.7
2,366,813 - -0.9
2,366,813 - -0.2
2,368,053 + BPHYT_RS30365 0.29 -0.8
2,368,828 - +0.8
2,369,776 + BPHYT_RS30370 0.54 +0.8

Or see this region's nucleotide sequence