Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS29095 and BPHYT_RS29100 are separated by 191 nucleotides BPHYT_RS29100 and BPHYT_RS29105 are separated by 15 nucleotides BPHYT_RS29105 and BPHYT_RS29110 are separated by 245 nucleotides
BPHYT_RS29095: BPHYT_RS29095 - coenzyme F420-dependent NADP oxidoreductase, at 2,081,689 to 2,082,288
_RS29095
BPHYT_RS29100: BPHYT_RS29100 - ketosteroid isomerase, at 2,082,480 to 2,082,896
_RS29100
BPHYT_RS29105: BPHYT_RS29105 - class V aminotransferase, at 2,082,912 to 2,084,039
_RS29105
BPHYT_RS29110: BPHYT_RS29110 - DNA-directed DNA polymerase, at 2,084,285 to 2,085,430
_RS29110
Position (kb)
2082
2083
2084
2085 Strain fitness (log2 ratio)
-1
0
1 at 2082.096 kb on - strand, within BPHYT_RS29095 at 2082.837 kb on + strand, within BPHYT_RS29100 at 2082.913 kb on + strand at 2083.234 kb on + strand, within BPHYT_RS29105 at 2083.691 kb on - strand, within BPHYT_RS29105 at 2083.901 kb on - strand, within BPHYT_RS29105 at 2083.958 kb on + strand at 2083.959 kb on - strand at 2084.064 kb on - strand at 2084.064 kb on - strand at 2084.065 kb on + strand at 2084.211 kb on + strand at 2084.230 kb on - strand at 2084.305 kb on - strand at 2084.377 kb on + strand at 2084.779 kb on + strand, within BPHYT_RS29110 at 2084.779 kb on + strand, within BPHYT_RS29110
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 2,082,096 - BPHYT_RS29095 0.68 +0.8 2,082,837 + BPHYT_RS29100 0.86 -0.6 2,082,913 + +0.6 2,083,234 + BPHYT_RS29105 0.29 -1.2 2,083,691 - BPHYT_RS29105 0.69 -0.8 2,083,901 - BPHYT_RS29105 0.88 -0.6 2,083,958 + -0.2 2,083,959 - +0.2 2,084,064 - +0.2 2,084,064 - -0.8 2,084,065 + -0.1 2,084,211 + +0.1 2,084,230 - +0.3 2,084,305 - -0.4 2,084,377 + -0.1 2,084,779 + BPHYT_RS29110 0.43 +1.1 2,084,779 + BPHYT_RS29110 0.43 +0.8
Or see this region's nucleotide sequence