Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22745

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22740 and BPHYT_RS22745 are separated by 92 nucleotidesBPHYT_RS22745 and BPHYT_RS22750 are separated by 446 nucleotides BPHYT_RS22740: BPHYT_RS22740 - ABC transporter permease, at 658,859 to 659,845 _RS22740 BPHYT_RS22745: BPHYT_RS22745 - sugar ABC transporter, at 659,938 to 660,942 _RS22745 BPHYT_RS22750: BPHYT_RS22750 - Flagellar brake protein YcgR 2, at 661,389 to 662,162 _RS22750 Position (kb) 659 660 661Strain fitness (log2 ratio) -2 -1 0 1at 659.164 kb on - strand, within BPHYT_RS22740at 659.236 kb on - strand, within BPHYT_RS22740at 659.546 kb on + strand, within BPHYT_RS22740at 659.926 kb on - strandat 660.068 kb on + strand, within BPHYT_RS22745at 660.488 kb on + strand, within BPHYT_RS22745at 660.872 kb on - strandat 661.274 kb on + strandat 661.275 kb on - strandat 661.306 kb on - strandat 661.726 kb on + strand, within BPHYT_RS22750at 661.778 kb on - strand, within BPHYT_RS22750

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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659,164 - BPHYT_RS22740 0.31 -1.6
659,236 - BPHYT_RS22740 0.38 -1.9
659,546 + BPHYT_RS22740 0.70 -1.9
659,926 - -1.4
660,068 + BPHYT_RS22745 0.13 -1.8
660,488 + BPHYT_RS22745 0.55 -1.5
660,872 - -2.3
661,274 + -0.8
661,275 - +0.3
661,306 - +0.4
661,726 + BPHYT_RS22750 0.44 +0.0
661,778 - BPHYT_RS22750 0.50 -0.5

Or see this region's nucleotide sequence