Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19920

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19915 and BPHYT_RS19920 are separated by 37 nucleotidesBPHYT_RS19920 and BPHYT_RS19925 are separated by 66 nucleotides BPHYT_RS19915: BPHYT_RS19915 - hemolysin D, at 12,320 to 13,693 _RS19915 BPHYT_RS19920: BPHYT_RS19920 - peptidyl-prolyl cis-trans isomerase, at 13,731 to 14,483 _RS19920 BPHYT_RS19925: BPHYT_RS19925 - peptidase C39, at 14,550 to 17,606 _RS19925 Position (kb) 13 14 15Strain fitness (log2 ratio) -1 0 1at 13.246 kb on + strand, within BPHYT_RS19915at 14.022 kb on + strand, within BPHYT_RS19920at 14.667 kb on + strandat 14.740 kb on + strandat 15.033 kb on + strand, within BPHYT_RS19925

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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13,246 + BPHYT_RS19915 0.67 +0.2
14,022 + BPHYT_RS19920 0.39 -0.9
14,667 + +0.3
14,740 + +1.4
15,033 + BPHYT_RS19925 0.16 +0.9

Or see this region's nucleotide sequence