Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14060

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS14055 and BPHYT_RS14060 are separated by 196 nucleotidesBPHYT_RS14060 and BPHYT_RS14065 are separated by 212 nucleotides BPHYT_RS14055: BPHYT_RS14055 - aldose epimerase, at 3,210,746 to 3,211,654 _RS14055 BPHYT_RS14060: BPHYT_RS14060 - peptidase M23, at 3,211,851 to 3,212,561 _RS14060 BPHYT_RS14065: BPHYT_RS14065 - hypothetical protein, at 3,212,774 to 3,213,100 _RS14065 Position (kb) 3211 3212 3213Strain fitness (log2 ratio) -2 -1 0 1 2at 3211.142 kb on + strand, within BPHYT_RS14055at 3211.143 kb on - strand, within BPHYT_RS14055at 3211.215 kb on - strand, within BPHYT_RS14055at 3211.217 kb on + strand, within BPHYT_RS14055at 3211.218 kb on - strand, within BPHYT_RS14055at 3211.235 kb on + strand, within BPHYT_RS14055at 3211.235 kb on + strand, within BPHYT_RS14055at 3211.302 kb on - strand, within BPHYT_RS14055at 3211.354 kb on + strand, within BPHYT_RS14055at 3211.354 kb on + strand, within BPHYT_RS14055at 3211.355 kb on - strand, within BPHYT_RS14055at 3211.450 kb on + strand, within BPHYT_RS14055at 3211.450 kb on + strand, within BPHYT_RS14055at 3211.453 kb on + strand, within BPHYT_RS14055at 3211.453 kb on + strandat 3211.453 kb on + strand, within BPHYT_RS14055at 3211.454 kb on - strand, within BPHYT_RS14055at 3211.454 kb on - strand, within BPHYT_RS14055at 3211.454 kb on - strand, within BPHYT_RS14055at 3211.454 kb on - strand, within BPHYT_RS14055at 3211.456 kb on + strand, within BPHYT_RS14055at 3211.457 kb on - strand, within BPHYT_RS14055at 3211.490 kb on + strand, within BPHYT_RS14055at 3211.532 kb on + strand, within BPHYT_RS14055at 3211.532 kb on + strand, within BPHYT_RS14055at 3211.532 kb on + strand, within BPHYT_RS14055at 3211.533 kb on - strand, within BPHYT_RS14055at 3211.533 kb on - strand, within BPHYT_RS14055at 3211.533 kb on - strand, within BPHYT_RS14055at 3211.533 kb on - strand, within BPHYT_RS14055at 3211.533 kb on - strand, within BPHYT_RS14055at 3211.634 kb on - strandat 3211.855 kb on + strandat 3212.017 kb on + strand, within BPHYT_RS14060at 3212.270 kb on + strand, within BPHYT_RS14060at 3212.386 kb on - strand, within BPHYT_RS14060at 3212.515 kb on - strandat 3212.705 kb on - strandat 3212.757 kb on - strandat 3212.762 kb on + strandat 3212.763 kb on - strandat 3212.876 kb on + strand, within BPHYT_RS14065at 3212.951 kb on + strand, within BPHYT_RS14065at 3212.951 kb on + strand, within BPHYT_RS14065at 3212.952 kb on - strand, within BPHYT_RS14065at 3212.952 kb on - strand, within BPHYT_RS14065at 3212.981 kb on + strand, within BPHYT_RS14065at 3212.981 kb on + strand, within BPHYT_RS14065at 3213.132 kb on - strandat 3213.256 kb on - strandat 3213.256 kb on - strandat 3213.425 kb on - strandat 3213.427 kb on - strandat 3213.560 kb on + strandat 3213.560 kb on + strandat 3213.561 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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3,211,142 + BPHYT_RS14055 0.44 -0.4
3,211,143 - BPHYT_RS14055 0.44 -0.0
3,211,215 - BPHYT_RS14055 0.52 +0.3
3,211,217 + BPHYT_RS14055 0.52 +0.4
3,211,218 - BPHYT_RS14055 0.52 -0.0
3,211,235 + BPHYT_RS14055 0.54 -0.0
3,211,235 + BPHYT_RS14055 0.54 -0.5
3,211,302 - BPHYT_RS14055 0.61 +0.0
3,211,354 + BPHYT_RS14055 0.67 +0.4
3,211,354 + BPHYT_RS14055 0.67 +0.6
3,211,355 - BPHYT_RS14055 0.67 +0.6
3,211,450 + BPHYT_RS14055 0.77 +0.1
3,211,450 + BPHYT_RS14055 0.77 -0.2
3,211,453 + BPHYT_RS14055 0.78 +0.1
3,211,453 + -0.7
3,211,453 + BPHYT_RS14055 0.78 -0.1
3,211,454 - BPHYT_RS14055 0.78 -0.1
3,211,454 - BPHYT_RS14055 0.78 +0.9
3,211,454 - BPHYT_RS14055 0.78 -0.1
3,211,454 - BPHYT_RS14055 0.78 -0.5
3,211,456 + BPHYT_RS14055 0.78 +0.1
3,211,457 - BPHYT_RS14055 0.78 -0.1
3,211,490 + BPHYT_RS14055 0.82 -0.3
3,211,532 + BPHYT_RS14055 0.86 -0.4
3,211,532 + BPHYT_RS14055 0.86 -0.1
3,211,532 + BPHYT_RS14055 0.86 -0.9
3,211,533 - BPHYT_RS14055 0.87 +0.4
3,211,533 - BPHYT_RS14055 0.87 +1.9
3,211,533 - BPHYT_RS14055 0.87 -0.1
3,211,533 - BPHYT_RS14055 0.87 +0.6
3,211,533 - BPHYT_RS14055 0.87 +0.9
3,211,634 - +0.0
3,211,855 + +0.7
3,212,017 + BPHYT_RS14060 0.23 -1.1
3,212,270 + BPHYT_RS14060 0.59 -0.7
3,212,386 - BPHYT_RS14060 0.75 +0.4
3,212,515 - -2.0
3,212,705 - +0.0
3,212,757 - +0.9
3,212,762 + -0.3
3,212,763 - +0.2
3,212,876 + BPHYT_RS14065 0.31 +0.5
3,212,951 + BPHYT_RS14065 0.54 -0.1
3,212,951 + BPHYT_RS14065 0.54 +0.1
3,212,952 - BPHYT_RS14065 0.54 -0.4
3,212,952 - BPHYT_RS14065 0.54 +0.5
3,212,981 + BPHYT_RS14065 0.63 +0.3
3,212,981 + BPHYT_RS14065 0.63 -0.3
3,213,132 - +0.5
3,213,256 - +1.5
3,213,256 - +0.9
3,213,425 - +0.8
3,213,427 - +0.7
3,213,560 + -0.1
3,213,560 + +0.0
3,213,561 - +0.0

Or see this region's nucleotide sequence