Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11655

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11650 and BPHYT_RS11655 are separated by 416 nucleotidesBPHYT_RS11655 and BPHYT_RS11665 are separated by 842 nucleotides BPHYT_RS11650: BPHYT_RS11650 - hypothetical protein, at 2,643,978 to 2,644,883 _RS11650 BPHYT_RS11655: BPHYT_RS11655 - chromosome partitioning protein ParB, at 2,645,300 to 2,645,899 _RS11655 BPHYT_RS11665: BPHYT_RS11665 - ribonuclease, at 2,646,742 to 2,647,659 _RS11665 Position (kb) 2645 2646Strain fitness (log2 ratio) -1 0 1at 2644.373 kb on - strand, within BPHYT_RS11650at 2644.446 kb on + strand, within BPHYT_RS11650at 2644.509 kb on - strand, within BPHYT_RS11650at 2644.785 kb on + strand, within BPHYT_RS11650at 2645.042 kb on + strandat 2645.042 kb on + strandat 2645.116 kb on - strandat 2645.382 kb on - strand, within BPHYT_RS11655at 2645.928 kb on - strandat 2646.380 kb on + strandat 2646.405 kb on + strandat 2646.505 kb on - strandat 2646.670 kb on - strandat 2646.871 kb on + strand, within BPHYT_RS11665

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,644,373 - BPHYT_RS11650 0.44 -0.1
2,644,446 + BPHYT_RS11650 0.52 -0.3
2,644,509 - BPHYT_RS11650 0.59 -0.4
2,644,785 + BPHYT_RS11650 0.89 -0.4
2,645,042 + +0.7
2,645,042 + +0.0
2,645,116 - +0.5
2,645,382 - BPHYT_RS11655 0.14 -0.7
2,645,928 - -0.3
2,646,380 + +0.1
2,646,405 + +0.1
2,646,505 - +0.2
2,646,670 - -0.1
2,646,871 + BPHYT_RS11665 0.14 +0.3

Or see this region's nucleotide sequence