Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31890

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS31880 and BPHYT_RS31890 are separated by 690 nucleotidesBPHYT_RS31890 and BPHYT_RS31895 are separated by 710 nucleotides BPHYT_RS31880: BPHYT_RS31880 - ATP-binding protein, at 2,713,251 to 2,714,039 _RS31880 BPHYT_RS31890: BPHYT_RS31890 - transposase, at 2,714,730 to 2,715,131 _RS31890 BPHYT_RS31895: BPHYT_RS31895 - hypothetical protein, at 2,715,842 to 2,717,506 _RS31895 Position (kb) 2714 2715 2716Strain fitness (log2 ratio) -1 0 1at 2714.822 kb on - strand, within BPHYT_RS31890at 2715.172 kb on - strandat 2715.198 kb on - strandat 2715.354 kb on + strandat 2715.479 kb on + strandat 2715.677 kb on + strandat 2715.946 kb on + strandat 2716.026 kb on - strand, within BPHYT_RS31895at 2716.103 kb on + strand, within BPHYT_RS31895

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
2,714,822 - BPHYT_RS31890 0.23 -0.7
2,715,172 - -0.0
2,715,198 - -0.6
2,715,354 + -0.0
2,715,479 + +0.3
2,715,677 + -0.4
2,715,946 + -0.3
2,716,026 - BPHYT_RS31895 0.11 +0.3
2,716,103 + BPHYT_RS31895 0.16 +0.1

Or see this region's nucleotide sequence