Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24590

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24580 and BPHYT_RS24585 are separated by 222 nucleotidesBPHYT_RS24585 and BPHYT_RS24590 are separated by 116 nucleotidesBPHYT_RS24590 and BPHYT_RS24595 are separated by 483 nucleotides BPHYT_RS24580: BPHYT_RS24580 - hypothetical protein, at 1,084,272 to 1,084,601 _RS24580 BPHYT_RS24585: BPHYT_RS24585 - NUDIX hydrolase, at 1,084,824 to 1,085,411 _RS24585 BPHYT_RS24590: BPHYT_RS24590 - DeoR faimly transcriptional regulator, at 1,085,528 to 1,086,289 _RS24590 BPHYT_RS24595: BPHYT_RS24595 - aldehyde oxidase, at 1,086,773 to 1,089,601 _RS24595 Position (kb) 1085 1086 1087Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1084.737 kb on - strandat 1084.742 kb on + strandat 1084.999 kb on + strand, within BPHYT_RS24585at 1086.098 kb on + strand, within BPHYT_RS24590at 1086.236 kb on - strandat 1086.333 kb on + strandat 1086.333 kb on + strandat 1086.675 kb on + strandat 1087.070 kb on + strand, within BPHYT_RS24595at 1087.070 kb on + strand, within BPHYT_RS24595at 1087.070 kb on + strand, within BPHYT_RS24595at 1087.071 kb on - strand, within BPHYT_RS24595at 1087.172 kb on + strand, within BPHYT_RS24595at 1087.214 kb on + strand, within BPHYT_RS24595

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,084,737 - -0.2
1,084,742 + -0.1
1,084,999 + BPHYT_RS24585 0.30 +0.4
1,086,098 + BPHYT_RS24590 0.75 -2.3
1,086,236 - +0.3
1,086,333 + -0.1
1,086,333 + -0.5
1,086,675 + +0.3
1,087,070 + BPHYT_RS24595 0.10 +3.4
1,087,070 + BPHYT_RS24595 0.10 +1.2
1,087,070 + BPHYT_RS24595 0.10 +0.0
1,087,071 - BPHYT_RS24595 0.11 -0.6
1,087,172 + BPHYT_RS24595 0.14 -0.7
1,087,214 + BPHYT_RS24595 0.16 -0.7

Or see this region's nucleotide sequence