Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27740

Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27735 and BPHYT_RS27740 are separated by 37 nucleotidesBPHYT_RS27740 and BPHYT_RS27745 are separated by 297 nucleotides BPHYT_RS27735: BPHYT_RS27735 - nitroreductase, at 1,784,916 to 1,785,947 _RS27735 BPHYT_RS27740: BPHYT_RS27740 - hypothetical protein, at 1,785,985 to 1,786,260 _RS27740 BPHYT_RS27745: BPHYT_RS27745 - nitroreductase, at 1,786,558 to 1,787,229 _RS27745 Position (kb) 1785 1786 1787Strain fitness (log2 ratio) -1 0 1 2 3at 1785.204 kb on + strand, within BPHYT_RS27735at 1785.205 kb on - strand, within BPHYT_RS27735at 1785.616 kb on + strand, within BPHYT_RS27735at 1785.663 kb on - strand, within BPHYT_RS27735at 1785.663 kb on - strand, within BPHYT_RS27735at 1785.937 kb on + strandat 1785.938 kb on - strandat 1786.520 kb on + strandat 1786.520 kb on + strandat 1786.647 kb on - strand, within BPHYT_RS27745at 1786.844 kb on - strand, within BPHYT_RS27745at 1786.974 kb on - strand, within BPHYT_RS27745at 1786.975 kb on + strand, within BPHYT_RS27745at 1786.975 kb on + strand, within BPHYT_RS27745at 1786.975 kb on + strand, within BPHYT_RS27745at 1787.069 kb on - strand, within BPHYT_RS27745

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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1,785,204 + BPHYT_RS27735 0.28 +0.1
1,785,205 - BPHYT_RS27735 0.28 -0.9
1,785,616 + BPHYT_RS27735 0.68 +0.1
1,785,663 - BPHYT_RS27735 0.72 +0.1
1,785,663 - BPHYT_RS27735 0.72 -0.5
1,785,937 + +0.3
1,785,938 - +0.2
1,786,520 + +3.5
1,786,520 + +0.0
1,786,647 - BPHYT_RS27745 0.13 -0.1
1,786,844 - BPHYT_RS27745 0.43 -0.1
1,786,974 - BPHYT_RS27745 0.62 +0.4
1,786,975 + BPHYT_RS27745 0.62 -0.1
1,786,975 + BPHYT_RS27745 0.62 -0.9
1,786,975 + BPHYT_RS27745 0.62 -0.0
1,787,069 - BPHYT_RS27745 0.76 +0.3

Or see this region's nucleotide sequence