Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25185

Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25180 and BPHYT_RS25185 are separated by 18 nucleotidesBPHYT_RS25185 and BPHYT_RS25190 are separated by 53 nucleotidesBPHYT_RS25190 and BPHYT_RS25195 are separated by 49 nucleotides BPHYT_RS25180: BPHYT_RS25180 - serine hydroxymethyltransferase, at 1,221,876 to 1,223,150 _RS25180 BPHYT_RS25185: BPHYT_RS25185 - peptidase M19, at 1,223,169 to 1,224,140 _RS25185 BPHYT_RS25190: BPHYT_RS25190 - 4-vinyl reductase, at 1,224,194 to 1,224,730 _RS25190 BPHYT_RS25195: BPHYT_RS25195 - N-methylproline demethylase, at 1,224,780 to 1,226,843 _RS25195 Position (kb) 1223 1224 1225Strain fitness (log2 ratio) -1 0 1at 1222.545 kb on + strand, within BPHYT_RS25180at 1222.744 kb on - strand, within BPHYT_RS25180at 1223.521 kb on - strand, within BPHYT_RS25185at 1224.332 kb on + strand, within BPHYT_RS25190

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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1,222,545 + BPHYT_RS25180 0.52 +0.0
1,222,744 - BPHYT_RS25180 0.68 -0.1
1,223,521 - BPHYT_RS25185 0.36 -0.2
1,224,332 + BPHYT_RS25190 0.26 -0.6

Or see this region's nucleotide sequence