Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03570 and BPHYT_RS03575 are separated by 185 nucleotides BPHYT_RS03575 and BPHYT_RS03580 are separated by 8 nucleotides BPHYT_RS03580 and BPHYT_RS03585 are separated by 523 nucleotides
BPHYT_RS03570: BPHYT_RS03570 - heat-inducible transcription repressor HrcA, at 810,557 to 811,576
_RS03570
BPHYT_RS03575: BPHYT_RS03575 - ferrochelatase, at 811,762 to 812,832
_RS03575
BPHYT_RS03580: BPHYT_RS03580 - RNA-binding protein S4, at 812,841 to 813,248
_RS03580
BPHYT_RS03585: BPHYT_RS03585 - protein GrpE, at 813,772 to 814,356
_RS03585
Position (kb) 811
812
813 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 810.844 kb on + strand, within BPHYT_RS03570 at 810.844 kb on + strand, within BPHYT_RS03570 at 810.845 kb on - strand, within BPHYT_RS03570 at 810.845 kb on - strand, within BPHYT_RS03570 at 810.845 kb on - strand, within BPHYT_RS03570 at 811.003 kb on + strand, within BPHYT_RS03570 at 811.004 kb on - strand, within BPHYT_RS03570 at 811.091 kb on + strand, within BPHYT_RS03570 at 811.091 kb on + strand, within BPHYT_RS03570 at 811.091 kb on + strand, within BPHYT_RS03570 at 811.092 kb on - strand, within BPHYT_RS03570 at 811.414 kb on - strand, within BPHYT_RS03570 at 811.509 kb on - strand at 811.708 kb on + strand at 811.709 kb on - strand at 811.710 kb on + strand at 811.710 kb on + strand at 812.818 kb on - strand at 813.165 kb on + strand, within BPHYT_RS03580 at 813.165 kb on + strand, within BPHYT_RS03580 at 813.166 kb on - strand, within BPHYT_RS03580 at 813.166 kb on - strand, within BPHYT_RS03580 at 813.384 kb on + strand at 813.409 kb on - strand at 813.439 kb on + strand at 813.439 kb on + strand at 813.440 kb on - strand at 813.442 kb on - strand at 813.442 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.502 kb on + strand at 813.502 kb on + strand at 813.502 kb on + strand at 813.503 kb on - strand at 813.503 kb on - strand at 813.503 kb on - strand at 813.550 kb on - strand at 813.558 kb on + strand at 813.559 kb on - strand at 813.751 kb on + strand at 813.751 kb on + strand at 813.755 kb on + strand at 813.755 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 810,844 + BPHYT_RS03570 0.28 -1.3 810,844 + BPHYT_RS03570 0.28 -1.7 810,845 - BPHYT_RS03570 0.28 -3.7 810,845 - BPHYT_RS03570 0.28 -1.5 810,845 - BPHYT_RS03570 0.28 +0.4 811,003 + BPHYT_RS03570 0.44 -3.3 811,004 - BPHYT_RS03570 0.44 -1.5 811,091 + BPHYT_RS03570 0.52 -1.0 811,091 + BPHYT_RS03570 0.52 -1.2 811,091 + BPHYT_RS03570 0.52 -1.0 811,092 - BPHYT_RS03570 0.52 -1.8 811,414 - BPHYT_RS03570 0.84 -0.8 811,509 - -1.0 811,708 + -0.6 811,709 - +0.1 811,710 + +0.1 811,710 + -0.7 812,818 - +0.4 813,165 + BPHYT_RS03580 0.79 -0.3 813,165 + BPHYT_RS03580 0.79 -0.2 813,166 - BPHYT_RS03580 0.80 +0.2 813,166 - BPHYT_RS03580 0.80 -0.3 813,384 + -0.1 813,409 - -0.3 813,439 + -0.6 813,439 + -1.0 813,440 - -0.0 813,442 - +0.7 813,442 - +1.8 813,492 - -0.0 813,492 - -1.3 813,492 - +0.2 813,492 - -0.2 813,492 - -0.0 813,492 - +0.4 813,492 - -0.3 813,502 + +0.4 813,502 + +0.5 813,502 + -0.4 813,503 - -0.2 813,503 - +1.9 813,503 - +0.5 813,550 - +1.1 813,558 + +0.4 813,559 - +0.4 813,751 + -0.3 813,751 + -0.4 813,755 + +0.8 813,755 + -0.1
Or see this region's nucleotide sequence