Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02030 and BPHYT_RS02035 are separated by 331 nucleotides BPHYT_RS02035 and BPHYT_RS02040 are separated by 80 nucleotides BPHYT_RS02040 and BPHYT_RS02045 are separated by 121 nucleotides
BPHYT_RS02030: BPHYT_RS02030 - potassium channel protein, at 465,161 to 466,120
_RS02030
BPHYT_RS02035: BPHYT_RS02035 - hypothetical protein, at 466,452 to 466,697
_RS02035
BPHYT_RS02040: BPHYT_RS02040 - hypothetical protein, at 466,778 to 467,008
_RS02040
BPHYT_RS02045: BPHYT_RS02045 - Fructokinase (EC 2.7.1.4) <small>(from data)</small>, at 467,130 to 468,047
_RS02045
Position (kb) 466
467
468 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 465.880 kb on - strand, within BPHYT_RS02030 at 465.880 kb on - strand, within BPHYT_RS02030 at 465.969 kb on + strand, within BPHYT_RS02030 at 465.969 kb on + strand, within BPHYT_RS02030 at 465.970 kb on - strand, within BPHYT_RS02030 at 466.306 kb on - strand at 466.472 kb on + strand at 466.473 kb on - strand at 466.666 kb on + strand, within BPHYT_RS02035 at 466.667 kb on - strand, within BPHYT_RS02035 at 466.870 kb on - strand, within BPHYT_RS02040 at 466.977 kb on + strand, within BPHYT_RS02040 at 466.978 kb on - strand, within BPHYT_RS02040 at 466.978 kb on - strand, within BPHYT_RS02040 at 466.992 kb on + strand at 466.993 kb on - strand at 467.049 kb on + strand at 467.050 kb on - strand at 467.050 kb on - strand at 467.301 kb on - strand, within BPHYT_RS02045 at 467.528 kb on - strand, within BPHYT_RS02045 at 467.645 kb on + strand, within BPHYT_RS02045 at 467.645 kb on + strand, within BPHYT_RS02045 at 467.743 kb on + strand, within BPHYT_RS02045
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 465,880 - BPHYT_RS02030 0.75 -0.0 465,880 - BPHYT_RS02030 0.75 -0.6 465,969 + BPHYT_RS02030 0.84 -1.8 465,969 + BPHYT_RS02030 0.84 +0.5 465,970 - BPHYT_RS02030 0.84 +1.1 466,306 - -0.3 466,472 + +0.8 466,473 - +0.2 466,666 + BPHYT_RS02035 0.87 -0.1 466,667 - BPHYT_RS02035 0.87 +1.3 466,870 - BPHYT_RS02040 0.40 -0.1 466,977 + BPHYT_RS02040 0.86 +0.6 466,978 - BPHYT_RS02040 0.87 +0.6 466,978 - BPHYT_RS02040 0.87 -0.2 466,992 + -0.4 466,993 - +0.5 467,049 + -0.4 467,050 - -0.4 467,050 - +0.2 467,301 - BPHYT_RS02045 0.19 -2.0 467,528 - BPHYT_RS02045 0.43 -3.1 467,645 + BPHYT_RS02045 0.56 -2.6 467,645 + BPHYT_RS02045 0.56 -3.1 467,743 + BPHYT_RS02045 0.67 -1.8
Or see this region's nucleotide sequence