Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00315 and BPHYT_RS00320 are separated by 145 nucleotides
BPHYT_RS00315: BPHYT_RS00315 - hypothetical protein, at 79,164 to 79,841
_RS00315
BPHYT_RS00320: BPHYT_RS00320 - amino acid ABC transporter substrate-binding protein, at 79,987 to 81,129
_RS00320
Position (kb) 79
80
81
82 Strain fitness (log2 ratio) -1
0
1 at 79.925 kb on + strand at 79.925 kb on + strand at 79.926 kb on - strand at 79.926 kb on - strand at 79.926 kb on - strand at 79.944 kb on - strand at 79.944 kb on - strand at 80.470 kb on + strand, within BPHYT_RS00320 at 80.471 kb on - strand, within BPHYT_RS00320 at 80.643 kb on + strand, within BPHYT_RS00320 at 80.643 kb on + strand, within BPHYT_RS00320 at 80.644 kb on - strand, within BPHYT_RS00320 at 80.644 kb on - strand, within BPHYT_RS00320 at 80.644 kb on - strand, within BPHYT_RS00320 at 80.644 kb on - strand, within BPHYT_RS00320 at 80.670 kb on - strand, within BPHYT_RS00320 at 80.825 kb on - strand, within BPHYT_RS00320 at 80.875 kb on + strand, within BPHYT_RS00320 at 80.908 kb on + strand, within BPHYT_RS00320 at 80.987 kb on - strand, within BPHYT_RS00320 at 80.987 kb on - strand, within BPHYT_RS00320 at 81.076 kb on - strand at 81.082 kb on + strand at 81.387 kb on - strand at 81.444 kb on + strand at 81.448 kb on + strand at 81.568 kb on + strand at 81.569 kb on - strand at 81.653 kb on + strand at 81.682 kb on - strand at 81.833 kb on + strand at 81.912 kb on - strand at 81.912 kb on - strand at 81.980 kb on + strand at 81.981 kb on - strand at 82.023 kb on + strand at 82.023 kb on + strand at 82.112 kb on + strand at 82.112 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 79,925 + +0.1 79,925 + -0.4 79,926 - +0.1 79,926 - -0.3 79,926 - +0.1 79,944 - -0.2 79,944 - -0.0 80,470 + BPHYT_RS00320 0.42 -1.0 80,471 - BPHYT_RS00320 0.42 +1.3 80,643 + BPHYT_RS00320 0.57 -0.1 80,643 + BPHYT_RS00320 0.57 +0.0 80,644 - BPHYT_RS00320 0.57 -0.2 80,644 - BPHYT_RS00320 0.57 +0.5 80,644 - BPHYT_RS00320 0.57 -0.6 80,644 - BPHYT_RS00320 0.57 +0.2 80,670 - BPHYT_RS00320 0.60 -0.2 80,825 - BPHYT_RS00320 0.73 +0.1 80,875 + BPHYT_RS00320 0.78 +0.6 80,908 + BPHYT_RS00320 0.81 -1.0 80,987 - BPHYT_RS00320 0.87 +0.7 80,987 - BPHYT_RS00320 0.87 -0.3 81,076 - -0.0 81,082 + +0.5 81,387 - -0.0 81,444 + -0.7 81,448 + +0.0 81,568 + +0.7 81,569 - -0.0 81,653 + +0.3 81,682 - -0.7 81,833 + +0.4 81,912 - +0.3 81,912 - -0.7 81,980 + +0.1 81,981 - +0.1 82,023 + -1.3 82,023 + -1.3 82,112 + -1.3 82,112 + -0.4
Or see this region's nucleotide sequence