Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35335 and BPHYT_RS35340 are separated by 40 nucleotides BPHYT_RS35340 and BPHYT_RS35345 overlap by 4 nucleotides BPHYT_RS35345 and BPHYT_RS35350 are separated by 75 nucleotides
BPHYT_RS35335: BPHYT_RS35335 - cobalamin biosynthesis protein, at 3,526,712 to 3,527,794
_RS35335
BPHYT_RS35340: BPHYT_RS35340 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 3,527,835 to 3,528,425
_RS35340
BPHYT_RS35345: BPHYT_RS35345 - decarboxylase UbiD, at 3,528,422 to 3,529,816
_RS35345
BPHYT_RS35350: BPHYT_RS35350 - amidohydrolase, at 3,529,892 to 3,530,818
_RS35350
Position (kb) 3528
3529
3530 Strain fitness (log2 ratio) -1
0
1
2 at 3527.697 kb on + strand at 3527.833 kb on + strand at 3527.845 kb on + strand at 3527.846 kb on - strand at 3528.015 kb on + strand, within BPHYT_RS35340 at 3528.066 kb on + strand, within BPHYT_RS35340 at 3528.236 kb on - strand, within BPHYT_RS35340 at 3528.361 kb on - strand, within BPHYT_RS35340 at 3528.604 kb on + strand, within BPHYT_RS35345 at 3529.399 kb on - strand, within BPHYT_RS35345 at 3529.536 kb on + strand, within BPHYT_RS35345 at 3529.589 kb on - strand, within BPHYT_RS35345 at 3529.727 kb on - strand at 3529.817 kb on - strand at 3530.536 kb on - strand, within BPHYT_RS35350 at 3530.599 kb on - strand, within BPHYT_RS35350 at 3530.709 kb on + strand, within BPHYT_RS35350 at 3530.709 kb on + strand, within BPHYT_RS35350 at 3530.709 kb on + strand, within BPHYT_RS35350
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 3,527,697 + +0.0 3,527,833 + -0.3 3,527,845 + +0.2 3,527,846 - +0.9 3,528,015 + BPHYT_RS35340 0.30 -0.1 3,528,066 + BPHYT_RS35340 0.39 -0.8 3,528,236 - BPHYT_RS35340 0.68 -0.8 3,528,361 - BPHYT_RS35340 0.89 -1.5 3,528,604 + BPHYT_RS35345 0.13 +0.5 3,529,399 - BPHYT_RS35345 0.70 -0.3 3,529,536 + BPHYT_RS35345 0.80 +0.2 3,529,589 - BPHYT_RS35345 0.84 +0.5 3,529,727 - +2.7 3,529,817 - +0.9 3,530,536 - BPHYT_RS35350 0.69 -1.7 3,530,599 - BPHYT_RS35350 0.76 -0.9 3,530,709 + BPHYT_RS35350 0.88 -0.2 3,530,709 + BPHYT_RS35350 0.88 +1.1 3,530,709 + BPHYT_RS35350 0.88 -0.4
Or see this region's nucleotide sequence