Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS32290 and BPHYT_RS32295 are separated by 86 nucleotides BPHYT_RS32295 and BPHYT_RS32300 are separated by 6 nucleotides BPHYT_RS32300 and BPHYT_RS32305 are separated by 202 nucleotides BPHYT_RS32305 and BPHYT_RS32310 are separated by 154 nucleotides
BPHYT_RS32290: BPHYT_RS32290 - hypothetical protein, at 2,814,521 to 2,815,210
_RS32290
BPHYT_RS32295: BPHYT_RS32295 - ATP-binding protein, at 2,815,297 to 2,816,085
_RS32295
BPHYT_RS32300: BPHYT_RS32300 - integrase, at 2,816,092 to 2,817,609
_RS32300
BPHYT_RS32305: BPHYT_RS32305 - hypothetical protein, at 2,817,812 to 2,818,234
_RS32305
BPHYT_RS32310: BPHYT_RS32310 - porin, at 2,818,389 to 2,819,576
_RS32310
Position (kb) 2816
2817
2818 Strain fitness (log2 ratio) -1
0
1 at 2815.094 kb on + strand, within BPHYT_RS32290 at 2817.813 kb on + strand at 2817.848 kb on + strand at 2817.860 kb on + strand, within BPHYT_RS32305 at 2817.948 kb on + strand, within BPHYT_RS32305 at 2818.328 kb on - strand at 2818.328 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 2,815,094 + BPHYT_RS32290 0.83 -1.6 2,817,813 + -0.4 2,817,848 + -0.3 2,817,860 + BPHYT_RS32305 0.11 -1.0 2,817,948 + BPHYT_RS32305 0.32 -0.2 2,818,328 - +1.0 2,818,328 - +0.4
Or see this region's nucleotide sequence