Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27870

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27865 and BPHYT_RS27870 are separated by 54 nucleotidesBPHYT_RS27870 and BPHYT_RS27875 are separated by 272 nucleotides BPHYT_RS27865: BPHYT_RS27865 - ATPase, at 1,813,896 to 1,816,406 _RS27865 BPHYT_RS27870: BPHYT_RS27870 - hypothetical protein, at 1,816,461 to 1,816,946 _RS27870 BPHYT_RS27875: BPHYT_RS27875 - CreA family protein, at 1,817,219 to 1,817,686 _RS27875 Position (kb) 1816 1817Strain fitness (log2 ratio) -1 0 1at 1817.330 kb on + strand, within BPHYT_RS27875at 1817.331 kb on - strand, within BPHYT_RS27875at 1817.382 kb on - strand, within BPHYT_RS27875at 1817.646 kb on + strandat 1817.646 kb on + strandat 1817.649 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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1,817,330 + BPHYT_RS27875 0.24 -1.1
1,817,331 - BPHYT_RS27875 0.24 -1.0
1,817,382 - BPHYT_RS27875 0.35 +0.8
1,817,646 + -0.2
1,817,646 + -0.4
1,817,649 + -0.7

Or see this region's nucleotide sequence