Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25555

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25550 and BPHYT_RS25555 are separated by 272 nucleotidesBPHYT_RS25555 and BPHYT_RS25560 are separated by 100 nucleotidesBPHYT_RS25560 and BPHYT_RS25565 overlap by 4 nucleotides BPHYT_RS25550: BPHYT_RS25550 - hypothetical protein, at 1,305,915 to 1,306,607 _RS25550 BPHYT_RS25555: BPHYT_RS25555 - alkyl hydroperoxide reductase, at 1,306,880 to 1,307,560 _RS25555 BPHYT_RS25560: BPHYT_RS25560 - RNA polymerase sigma factor, at 1,307,661 to 1,308,233 _RS25560 BPHYT_RS25565: BPHYT_RS25565 - hypothetical protein, at 1,308,230 to 1,308,871 _RS25565 Position (kb) 1306 1307 1308Strain fitness (log2 ratio) -1 0 1at 1306.941 kb on - strandat 1307.935 kb on - strand, within BPHYT_RS25560at 1307.936 kb on + strand, within BPHYT_RS25560

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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1,306,941 - +0.8
1,307,935 - BPHYT_RS25560 0.48 +1.4
1,307,936 + BPHYT_RS25560 0.48 +1.2

Or see this region's nucleotide sequence