Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24495

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24485 and BPHYT_RS24490 are separated by 91 nucleotidesBPHYT_RS24490 and BPHYT_RS24495 are separated by 193 nucleotidesBPHYT_RS24495 and BPHYT_RS24500 overlap by 4 nucleotides BPHYT_RS24485: BPHYT_RS24485 - thioredoxin reductase, at 1,062,523 to 1,063,158 _RS24485 BPHYT_RS24490: BPHYT_RS24490 - hypothetical protein, at 1,063,250 to 1,063,882 _RS24490 BPHYT_RS24495: BPHYT_RS24495 - transcriptional regulator, at 1,064,076 to 1,064,747 _RS24495 BPHYT_RS24500: BPHYT_RS24500 - histidine kinase, at 1,064,744 to 1,066,144 _RS24500 Position (kb) 1064 1065Strain fitness (log2 ratio) -2 -1 0 1at 1063.178 kb on - strandat 1063.391 kb on - strand, within BPHYT_RS24490at 1063.444 kb on + strand, within BPHYT_RS24490at 1063.623 kb on + strand, within BPHYT_RS24490at 1063.623 kb on + strand, within BPHYT_RS24490at 1063.624 kb on - strand, within BPHYT_RS24490at 1063.990 kb on + strandat 1063.990 kb on + strandat 1064.148 kb on + strand, within BPHYT_RS24495at 1064.726 kb on + strandat 1065.473 kb on + strand, within BPHYT_RS24500at 1065.587 kb on + strand, within BPHYT_RS24500

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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1,063,178 - +0.4
1,063,391 - BPHYT_RS24490 0.22 -0.6
1,063,444 + BPHYT_RS24490 0.31 +0.6
1,063,623 + BPHYT_RS24490 0.59 +0.2
1,063,623 + BPHYT_RS24490 0.59 +0.8
1,063,624 - BPHYT_RS24490 0.59 +0.4
1,063,990 + -0.4
1,063,990 + +0.1
1,064,148 + BPHYT_RS24495 0.11 -1.1
1,064,726 + -0.7
1,065,473 + BPHYT_RS24500 0.52 -0.0
1,065,587 + BPHYT_RS24500 0.60 -2.5

Or see this region's nucleotide sequence