Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24135 and BPHYT_RS24140 are separated by 222 nucleotides BPHYT_RS24140 and BPHYT_RS24145 are separated by 101 nucleotides
BPHYT_RS24135: BPHYT_RS24135 - alpha-dehydro-beta-deoxy-D-glucarate aldolase, at 981,972 to 982,772
_RS24135
BPHYT_RS24140: BPHYT_RS24140 - 2,5-dioxovalerate dehydrogenase, at 982,995 to 984,578
_RS24140
BPHYT_RS24145: BPHYT_RS24145 - GntR family transcriptional regulator, at 984,680 to 985,423
_RS24145
Position (kb) 982
983
984
985 Strain fitness (log2 ratio) -2
-1
0
1
2 at 982.082 kb on + strand, within BPHYT_RS24135 at 982.305 kb on + strand, within BPHYT_RS24135 at 982.305 kb on + strand, within BPHYT_RS24135 at 982.736 kb on + strand at 982.754 kb on - strand at 982.885 kb on - strand at 982.885 kb on - strand at 983.784 kb on + strand, within BPHYT_RS24140 at 983.903 kb on + strand, within BPHYT_RS24140 at 984.027 kb on + strand, within BPHYT_RS24140 at 984.272 kb on - strand, within BPHYT_RS24140 at 984.600 kb on + strand at 984.607 kb on + strand at 985.497 kb on - strand at 985.499 kb on - strand at 985.499 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 982,082 + BPHYT_RS24135 0.14 -0.2 982,305 + BPHYT_RS24135 0.42 +1.8 982,305 + BPHYT_RS24135 0.42 +0.1 982,736 + +0.8 982,754 - -0.8 982,885 - +0.7 982,885 - +0.0 983,784 + BPHYT_RS24140 0.50 +0.8 983,903 + BPHYT_RS24140 0.57 +0.1 984,027 + BPHYT_RS24140 0.65 -1.0 984,272 - BPHYT_RS24140 0.81 -1.2 984,600 + -0.2 984,607 + -0.1 985,497 - -0.5 985,499 - +0.4 985,499 - -1.9
Or see this region's nucleotide sequence