Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23075

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23070 and BPHYT_RS23075 are separated by 162 nucleotidesBPHYT_RS23075 and BPHYT_RS23080 are separated by 225 nucleotides BPHYT_RS23070: BPHYT_RS23070 - hypothetical protein, at 738,280 to 740,211 _RS23070 BPHYT_RS23075: BPHYT_RS23075 - GntR family transcriptional regulator, at 740,374 to 741,030 _RS23075 BPHYT_RS23080: BPHYT_RS23080 - gamma-glutamyltransferase, at 741,256 to 743,040 _RS23080 Position (kb) 740 741 742Strain fitness (log2 ratio) -2 -1 0 1 2 3at 739.856 kb on + strand, within BPHYT_RS23070at 739.992 kb on - strand, within BPHYT_RS23070at 740.267 kb on - strandat 740.267 kb on - strandat 740.295 kb on + strandat 740.844 kb on - strand, within BPHYT_RS23075at 741.201 kb on + strandat 741.540 kb on - strand, within BPHYT_RS23080at 741.658 kb on + strand, within BPHYT_RS23080at 741.835 kb on + strand, within BPHYT_RS23080at 741.837 kb on + strand, within BPHYT_RS23080at 741.837 kb on + strand, within BPHYT_RS23080at 741.838 kb on - strand, within BPHYT_RS23080at 741.838 kb on - strand, within BPHYT_RS23080

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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739,856 + BPHYT_RS23070 0.82 +1.2
739,992 - BPHYT_RS23070 0.89 +2.8
740,267 - -1.0
740,267 - -0.6
740,295 + +0.7
740,844 - BPHYT_RS23075 0.72 -0.7
741,201 + -0.4
741,540 - BPHYT_RS23080 0.16 -0.9
741,658 + BPHYT_RS23080 0.23 +0.3
741,835 + BPHYT_RS23080 0.32 +1.1
741,837 + BPHYT_RS23080 0.33 -2.2
741,837 + BPHYT_RS23080 0.33 -0.3
741,838 - BPHYT_RS23080 0.33 +0.7
741,838 - BPHYT_RS23080 0.33 +1.2

Or see this region's nucleotide sequence